ARE 10-Q Quarterly Report March 31, 2012 | Alphaminr
ALEXANDRIA REAL ESTATE EQUITIES, INC.

ARE 10-Q Quarter ended March 31, 2012

ALEXANDRIA REAL ESTATE EQUITIES, INC.
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10-Q 1 a12-7035_110q.htm 10-Q

Table of Contents

UNITED STATES
SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 10-Q

(Mark One)

x QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended March 31, 2012

OR

o TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from ____________ to ____________

Commission file number 1-12993

ALEXANDRIA REAL ESTATE EQUITIES, INC.

(Exact name of registrant as specified in its charter)

Maryland

95-4502084

(State or other jurisdiction of
incorporation or organization)

(I.R.S. Employer Identification Number)

385 East Colorado Boulevard, Suite 299, Pasadena, California 91101

(Address of principal executive offices) (Zip code)

(626) 578-0777

(Registrant’s telephone number, including area code)

N/A
(Former name, former address and former fiscal year, if changed since last report)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports) and (2) has been subject to such filing requirements for the past 90 days.  Yes x No o

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).    Yes x No o

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company.  See the definitions of “large accelerated filer,” “accelerated filer,” and “smaller reporting company” in Rule 12b-2 of the Exchange Act.

Large accelerated filer x

Accelerated filer o

Non-accelerated filer o (Do not check if a smaller reporting company)

Smaller reporting company o

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act). Yes o No x

As of May 2, 2012, 62,084,846 shares of common stock, par value $.01 per share, were outstanding.



Table of Contents

TABLE OF CONTENTS

Page

PART I – FINANCIAL INFORMATION

Item 1.

FINANCIAL STATEMENTS (UNAUDITED)

Condensed Consolidated Balance Sheets as of March 31, 2012, and December 31, 2011

3

Condensed Consolidated Statements of Income for the Three Months Ended March 31, 2012 and 2011

4

Condensed Consolidated Statements of Comprehensive Income for the Three Months Ended March 31, 2012 and 2011

5

Condensed Consolidated Statement of Changes in Stockholders’ Equity and Noncontrolling Interests for the Three Months Ended March 31, 2012

6

Condensed Consolidated Statements of Cash Flows for the Three Months Ended March 31, 2012 and 2011

7

Notes to Condensed Consolidated Financial Statements

8

Item 2.

MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

39

Item 3.

QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK

78

Item 4.

CONTROLS AND PROCEDURES

79

PART II – OTHER INFORMATION

Item 1A.

RISK FACTORS

79

Item 5.

OTHER INFORMATION

79

Item 6.

EXHIBITS

81

SIGNATURES

83



Table of Contents

PART I FINANCIAL INFORMATION

Item 1. FINANCIAL STATEMENTS (UNAUDITED)

Alexandria Real Estate Equities, Inc.
Condensed Consolidated Balance Sheets
(In thousands)
(Unaudited)

March 31,

December 31,

2012

2011

Assets

Investments in real estate

$

6,892,429

$

6,750,975

Less: accumulated depreciation

(779,177

)

(742,535

)

Investments in real estate, net

6,113,252

6,008,440

Cash and cash equivalents

77,361

78,539

Restricted cash

39,803

23,332

Tenant receivables

8,836

7,480

Deferred rent

150,515

142,097

Deferred leasing and financing costs, net

143,754

135,550

Investments

98,152

95,777

Other assets

86,418

82,914

Total assets

$

6,718,091

$

6,574,129

Liabilities, Noncontrolling Interests, and Equity

Secured notes payable

$

721,715

$

724,305

Unsecured senior notes payable

549,536

Unsecured senior line of credit

167,000

370,000

Unsecured senior bank term loans

1,350,000

1,600,000

Unsecured senior convertible notes

1,236

84,959

Accounts payable, accrued expenses, and tenant security deposits

323,002

325,393

Dividends payable

36,962

36,579

Preferred stock redemption liability

129,638

Total liabilities

3,279,089

3,141,236

Commitments and contingencies

Redeemable noncontrolling interests

15,819

16,034

Alexandria Real Estate Equities, Inc.’s stockholders’ equity:

Series C Preferred Stock

129,638

Series D Convertible Preferred Stock

250,000

250,000

Series E Preferred Stock

130,000

Common stock

616

616

Additional paid-in capital

3,022,242

3,028,558

Accumulated other comprehensive loss

(23,088

)

(34,511

)

Alexandria Real Estate Equities, Inc.’s stockholders’ equity

3,379,770

3,374,301

Noncontrolling interests

43,413

42,558

Total equity

3,423,183

3,416,859

Total liabilities, noncontrolling interests, and equity

$

6,718,091

$

6,574,129

The accompanying notes are an integral part of these condensed consolidated financial statements.

3



Table of Contents

Alexandria Real Estate Equities, Inc.
Condensed Consolidated Statements of Income
(In thousands, except per share amounts)
(Unaudited)

Three Months Ended
March 31,

2012

2011

Revenues

Rental

$

107,785

$

106,253

Tenant recoveries

34,552

32,890

Other income

2,629

777

Total revenues

144,966

139,920

Expenses

Rental operations

43,410

41,061

General and administrative

10,361

9,497

Interest

16,227

17,810

Depreciation and amortization

43,405

36,582

Total expenses

113,403

104,950

Income from continuing operations before loss on early extinguishment of debt

31,563

34,970

Loss on early extinguishment of debt

(623

)

(2,495

)

Income from continuing operations

30,940

32,475

(Loss) income from discontinued operations, net

(29

)

150

Gain on sale of land parcel

1,864

-

Net income

32,775

32,625

Net income attributable to noncontrolling interests

711

929

Dividends on preferred stock

7,483

7,089

Preferred stock redemption charge

5,978

Net income attributable to unvested restricted stock awards

235

242

Net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

18,368

$

24,365

Earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common
stockholders – basic

Continuing operations

$

0.30

$

0.44

Discontinued operations, net

Earnings per share – basic

$

0.30

$

0.44

Earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common
stockholders – diluted

Continuing operations

$

0.30

$

0.44

Discontinued operations, net

Earnings per share – diluted

$

0.30

$

0.44

The accompanying notes are an integral part of these condensed consolidated financial statements.

4



Table of Contents

Alexandria Real Estate Equities, Inc.
Condensed Consolidated Statements of Comprehensive Income
(In thousands)
(Unaudited)

Three Months Ended
March 31,

2012

2011

Net income

$

32,775

$

32,625

Other comprehensive income:

Unrealized (loss) gain on marketable securities

Unrealized holding gains arising during the period

674

513

Reclassification adjustment for gains included in net income

(924

)

Unrealized (loss) gain on marketable securities, net

(250

)

513

Unrealized gain on interest rate swaps

Unrealized interest rate swap (losses) gains arising during the period

(4,073

)

300

Reclassification adjustment for amortization of interest expense included in net income

5,775

5,439

Unrealized gain on interest rate swap agreements, net

1,702

5,739

Foreign currency translation gain

9,959

4,883

Total other comprehensive income

11,411

11,135

Comprehensive income

44,186

43,760

Less: comprehensive income attributable to noncontrolling interests

(699

)

(922

)

Comprehensive income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

43,487

$

42,838

The accompanying notes are an integral part of these condensed consolidated financial statements.

5



Table of Contents

Alexandria Real Estate Equities, Inc.

Condensed Consolidated Statement of Changes in Stockholders’ Equity and Noncontrolling Interests

(Dollars in thousands)

(Unaudited)

Alexandria Real Estate Equities, Inc.’s Stockholders’ Equity

Series C
Preferred
Stock

Series D
Convertible
Preferred
Stock

Series E
Preferred
Stock

Number of
Common
Shares

Common
Stock

Additional
Paid-In Capital

Retained
Earnings

Accumulated
Other
Comprehensive
Loss

Noncontrolling
Interests

Total
Equity

Redeemable
Noncontrolling
Interests

Balance at December 31, 2011

$

129,638

$

250,000

$

61,560,472

$

616

$

3,028,558

$

$

(34,511

)

$

42,558

$

3,416,859

$

16,034

Net income

32,064

586

32,650

125

Unrealized loss on marketable securities

(250

)

(250

)

Unrealized gain on interest rate swap agreements

1,702

1,702

Foreign currency translation gain (loss)

9,971

13

9,984

(25

)

Contributions by noncontrolling interests

625

625

Distributions to noncontrolling interests

(369

)

(369

)

(315

)

Issuance of Series E Preferred Stock, net of offering costs

130,000

(5,132

)

124,868

Issuances pursuant to stock plan

74,173

4,961

4,961

Notice of redemption of Series C Preferred Stock

(129,638

)

5,978

(5,978

)

(129,638

)

Dividends declared on common stock

(30,397

)

(30,397

)

Dividends declared on preferred stock

(7,812

)

(7,812

)

Distributions in excess of earnings

(12,123

)

12,123

Balance at March 31, 2012

$

$

250,000

$

130,000

61,634,645

$

616

$

3,022,242

$

$

(23,088

)

$

43,413

$

3,423,183

$

15,819

The accompanying notes are an integral part of these condensed consolidated financial statements.

6



Table of Contents

Alexandria Real Estate Equities, Inc.
Condensed Consolidated Statements of Cash Flows
(In thousands)
(Unaudited)

Three Months Ended

March 31,

2012

2011

Operating Activities

Net income

$

32,775

$

32,625

Adjustments to reconcile net income to net cash provided by operating activities:

Depreciation and amortization

43,405

36,707

Loss on early extinguishment of debt

623

2,495

Gain on sale of land parcel

(1,864

)

Amortization of loan fees and costs

2,643

2,278

Amortization of debt premiums/discounts

179

1,335

Amortization of acquired above and below market leases

(800

)

(4,854

)

Deferred rent

(8,796

)

(6,707

)

Stock compensation expense

3,293

2,356

Equity in loss related to investments

26

Gain on sales of investments

(1,999

)

(1,654

)

Loss on sales of investments

1

1,391

Changes in operating assets and liabilities:

Restricted cash

862

37

Tenant receivables

(1,237

)

(1,496

)

Deferred leasing costs

(7,011

)

(14,361

)

Other assets

(2,411

)

1,287

Accounts payable, accrued expenses, and tenant security deposits

(10,004

)

(6,971

)

Net cash provided by operating activities

49,685

44,468

Investing Activities

Additions to properties

(120,585

)

(74,287

)

Purchase of properties

(19,946

)

(7,458

)

Change in restricted cash related to construction projects

(1,400

)

259

Distribution from unconsolidated real estate entity

22,250

-

Contributions to unconsolidated real estate entity

(3,914

)

(757

)

Additions to investments

(5,438

)

(6,514

)

Proceeds from investments

4,785

2,495

Net cash used in investing activities

(124,248

)

(86,262

)

Financing Activities

Proceeds from issuance of unsecured senior notes payable

544,649

Proceeds from issuance of preferred stock

124,868

Principal reductions of secured notes payable

(2,688

)

(2,991

)

Principal borrowings from unsecured senior line of credit and unsecured senior bank term loan

248,000

460,000

Repayments of borrowings from unsecured senior line of credit

(451,000

)

(279,000

)

Repayment of unsecured senior bank term loan

(250,000

)

Repurchase of unsecured senior convertible notes

(83,801

)

(98,590

)

Change in restricted cash related to financings

(15,955

)

(2,188

)

Deferred financing costs paid

(5,300

)

(15,250

)

Proceeds from exercise of stock options

112

796

Dividends paid on common stock

(30,386

)

(24,923

)

Dividends paid on preferred stock

(7,089

)

(7,089

)

Distributions to redeemable noncontrolling interests

(315

)

(315

)

Contributions by noncontrolling interests

625

Distributions to noncontrolling interests

(369

)

(750

)

Net cash provided by financing activities

71,351

29,700

Effect of exchange rate changes on cash and cash equivalents

2,034

(942

)

Net decrease in cash and cash equivalents

(1,178

)

(13,036

)

Cash and cash equivalents at beginning of period

78,539

91,232

Cash and cash equivalents at end of period

$

77,361

$

78,196

The accompanying notes are an integral part of these condensed consolidated financial statements.

7



Table of Contents

Alexandria Real Estate Equities, Inc.
Notes to Condensed Consolidated Financial Statements
(Unaudited)

1. Background

As used in this quarterly report on Form 10-Q, references to the “Company,” “Alexandria,” “we,” “our,” and “us” refer to Alexandria Real Estate Equities, Inc. and its subsidiaries.

Alexandria Real Estate Equities, Inc., Landlord of Choice to the Life Science Industry ® , is the largest owner, preeminent real estate investment trust (“REIT”), and leading life science real estate company focused principally on science-driven cluster development through the ownership, operation, management, selective acquisition, development, and redevelopment of properties containing life science laboratory space.  We are the leading provider of high-quality, environmentally sustainable real estate, technical infrastructure, and services to the broad and diverse life science industry. Client tenants include institutional (universities and independent non-profit institutions), pharmaceutical, biotechnology, product and service entities, clean technology, medical device, and government agencies.  Our operating platform is based on the principle of “clustering,” with assets and operations located adjacent to life science entities, driving growth and technological advances within each cluster.  Our asset base contains 174 properties consisting of the following rentable square footage as of March 31, 2012:

Rentable Square Feet

Operating properties

13,641,270

Development properties

986,828

Redevelopment properties

910,139

Total

15,538,237

As of March 31, 2012, approximately 95% of our leases (on a rentable square footage basis) were triple net leases, requiring tenants to pay substantially all real estate taxes, insurance, utilities, common area expenses, and other operating expenses (including increases thereto) in addition to base rent.  Additionally, approximately 92% of our leases (on a rentable square footage basis) provided for the recapture of certain capital expenditures.  Approximately 94% of our leases (on a rentable square footage basis) contained effective annual rent escalations that were either fixed or based on a consumer price index or another index.

2. Basis of presentation

We have prepared the accompanying interim condensed consolidated financial statements in accordance with United States generally accepted accounting principles (“GAAP”) and in conformity with the rules and regulations of the Securities and Exchange Commission (“SEC”).  In our opinion, the interim condensed consolidated financial statements presented herein reflect all adjustments that are necessary to fairly present the interim condensed consolidated financial statements.  The results of operations for the interim period are not necessarily indicative of the results that may be expected for the year ending December 31, 2012.  These condensed consolidated financial statements should be read in conjunction with the consolidated financial statements and the notes thereto included in our annual report on Form 10-K for the year ended December 31, 2011.

The accompanying condensed consolidated financial statements include the accounts of Alexandria Real Estate Equities, Inc. and its subsidiaries.  All significant intercompany balances and transactions have been eliminated.

We hold interests, together with certain third parties, in companies that we consolidate in our financial statements.  We consolidate the companies because we exercise significant control over major decisions of these entities, such as investing activity and changes in financing.

Use of estimates

The preparation of condensed consolidated financial statements in conformity with GAAP requires us to make estimates and assumptions that affect the reported amounts of assets, liabilities, equity, the disclosure of contingent assets and liabilities as of the date of the condensed consolidated financial statements, and the amounts of revenues and expenses during the reporting period.  Actual results could materially differ from those estimates.

8



Table of Contents

2. Basis of presentation (continued)

Reclassifications

Certain prior period amounts have been reclassified to conform to the current period presentation.

International operations

The functional currency for our subsidiaries operating in the United States is the United States dollar.  We have five operating properties in Canada, and subsidiaries with construction projects in China and India.  The functional currencies for our foreign subsidiaries are the local currencies in each respective country.  The assets and liabilities of our foreign subsidiaries are translated into United States dollars at the exchange rate in effect as of the financial statement date.  Income statement accounts of our foreign subsidiaries are translated using the average exchange rate for the periods presented.  Gains or losses resulting from the translation are included in the condensed consolidated statement of comprehensive income and accumulated in other comprehensive loss as a separate component of total equity.

The appropriate amounts of foreign exchange rate gains or losses included in accumulated other comprehensive loss will be reflected in income when there is a sale or partial sale of our investment in these operations or upon a complete or substantially complete liquidation of the investment.

Investments in real estate, net, and discontinued operations

We recognize assets acquired (including the intangible value of above or below market leases, acquired in-place leases, tenant relationships, and other intangible assets or liabilities), liabilities assumed, and any noncontrolling interest in an acquired entity at their fair value as of the acquisition date.  The value of tangible assets acquired is based upon our estimation of value on an “as if vacant” basis.  The value of acquired in-place leases includes the estimated carrying costs during the hypothetical lease-up period and other costs that would have been incurred to execute similar leases, considering market conditions at the acquisition date of the acquired in-place lease. We assess the fair value of tangible and intangible assets based on numerous factors, including estimated cash flow projections that utilize appropriate discount and capitalization rates and available market information.  Estimates of future cash flows are based on a number of factors, including the historical operating results, known trends, market/economic conditions that may affect the property.  We also recognize the fair values of assets acquired, the liabilities assumed, and any noncontrolling interest in acquisitions of less than a 100% interest when the acquisition constitutes a change in control of the acquired entity.  Acquisition-related costs and restructuring costs are expensed as incurred.

The values allocated to land improvements, tenant improvements, equipment, buildings, and building improvements are depreciated on a straight-line basis using an estimated life of 20 years for land improvements, the respective lease term for tenant improvements, the estimated useful life for equipment, and the shorter of the term of the respective ground lease and up to 40 years for buildings and building improvements.  The values of acquired above and below market leases are amortized over the lives of the related leases and recorded as either an increase (for below market leases) or a decrease (for above market leases) to rental income.  The values of acquired in-place leases are included in other assets in the accompanying condensed consolidated balance sheets, and amortized over the remaining terms of the related leases.

We are required to capitalize direct construction and development costs, including predevelopment costs, interest, property taxes, insurance, and other costs directly related and essential to the acquisition, development, redevelopment, or construction of a project.  Capitalization of development, redevelopment, and construction costs is required while activities are ongoing to prepare an asset for its intended use.  Fluctuations in our development, redevelopment, and construction activities could result in significant changes to total expenses and net income.  Costs incurred after a project is substantially complete and ready for its intended use are expensed as incurred.  Should development, redevelopment, or construction activity cease, interest, property taxes, insurance, and certain other costs would no longer be eligible for capitalization and would be expensed as incurred. Expenditures for repairs and maintenance and demolition are expensed as incurred.

9



Table of Contents

2. Basis of presentation (continued)

Investments in real estate, net, and discontinued operations (continued)

A property is classified as “held for sale” when all of the following criteria for a plan of sale have been met: (1) management, having the authority to approve the action, commits to a plan to sell the property; (2) the property is available for immediate sale in its present condition, subject only to terms that are usual and customary; (3) an active program to locate a buyer and other actions required to complete the plan to sell have been initiated; (4) the sale of the property is probable and is expected to be completed within one year; (5) the property is being actively marketed for sale at a price that is reasonable in relation to its current fair value; and (6) actions necessary to complete the plan of sale indicate that it is unlikely that significant changes to the plan will be made or that the plan will be withdrawn.  When all of these criteria have been met, the property is classified as “held for sale”; its operations, including any interest expense directly attributable to it, are classified as discontinued operations in our condensed consolidated statements of income; and amounts for all prior periods presented are reclassified from continuing operations to discontinued operations.  Depreciation of assets ceases upon designation of a property as “held for sale.”

Long-lived assets to be held and used, including our rental properties, land held for future development, construction in progress, and intangibles, are individually evaluated for impairment when conditions exist that may indicate that the carrying amount of a long-lived asset may not be recoverable.  The carrying amount of a long-lived asset to be held and used is not recoverable if it exceeds the sum of the undiscounted cash flows expected to result from the use and eventual disposition of the asset.  Impairment indicators for long-lived assets to be held and used, including our rental properties, land held for future development, and construction in progress, are assessed by project and include, but are not limited to, significant fluctuations in estimated net operating income, occupancy changes, construction costs, estimated completion dates, rental rates, and other market factors.  We assess the expected undiscounted cash flows based upon numerous factors, including, but not limited to, construction costs, available market information, historical operating results, known trends, market/economic conditions that may affect the property, and our assumptions about the use of the asset, including, if necessary, a probability-weighted approach if multiple outcomes are under consideration.  Upon determination that an impairment has occurred, a write-down is recorded to reduce the carrying amount to its estimated fair value.

We use a “held for sale” impairment model for our properties classified as “held for sale.”  The “held for sale” impairment model is different from the held and used impairment model. Under the “held for sale” impairment model, an impairment loss is recognized if the carrying amount of the long-lived asset classified as “held for sale” exceeds its fair value less cost to sell.

Variable interest entity

We consolidate a variable interest entity (“VIE”) if it is determined that we are the primary beneficiary, an evaluation that we perform on an ongoing basis.  A VIE is broadly defined as an entity in which either (1) the equity investors as a group, if any, do not have a controlling financial interest, or (2) the equity investment at risk is insufficient to finance that entity’s activities without additional subordinated financial support.  We use qualitative analyses when determining whether or not we are the primary beneficiary of a VIE.  Factors considered include, but are not limited to, the purpose and design of the VIE, risks that the VIE was designed to create and pass through, the form of our ownership interest, our representation on the entity’s governing body, the size and seniority of our investment, our ability to participate in policy-making decisions, and the rights of the other investors to participate in the decision-making process and to replace us as manager and/or liquidate the venture, if applicable.  Our ability to correctly assess our influence or control over an entity at the inception of our involvement with the entity or upon reevaluation of the entity’s continuing status as a VIE and determine the primary beneficiary of a VIE affects the presentation of these entities in our condensed consolidated financial statements.

Cash and cash equivalents

We consider all highly liquid investments with original maturities of three months or less when purchased to be cash and cash equivalents.  The majority of our cash and cash equivalents are held at major commercial banks in accounts that usually exceed the Federal Deposit Insurance Corporation limit of $250,000.  We have not experienced any losses to date on our invested cash.

Restricted cash

Restricted cash primarily consists of funds held in trust under the terms of our secured notes payable, funds held in escrow related to our capital expenditures, and funds held for various other deposits.

10



Table of Contents

2. Basis of presentation (continued)

Investments

We hold equity investments in certain publicly traded companies and privately held entities primarily involved in the life science industry.  All of our investments in publicly traded companies are considered “available for sale” and are recorded at fair value.  Fair value has been determined based upon the closing price as of each balance sheet date, with unrealized gains and losses shown as a separate component of comprehensive income.  The classification of each investment is determined at the time each investment is made, and such determination is reevaluated at each balance sheet date.  The cost of each investment sold is determined by the specific identification method, with net realized gains included in other income.  Investments in privately held entities are generally accounted for under the cost method when our interest in the entity is so minor that we have virtually no influence over the entity’s operating and financial policies.  Additionally, we limit our ownership percentage in the voting stock of each individual entity to less than 10%.  As of March 31, 2012, and December 31, 2011, our ownership percentage in the voting stock of each individual entity was less than 10%.

Individual investments are evaluated for impairment when changes in conditions may indicate an impairment exists. The factors that we consider in making these assessments include, but are not limited to, market prices, market conditions, available financing, prospects for favorable or unfavorable clinical trial results, new product initiatives, and new collaborative agreements. If there are no identified events or changes in circumstances that would have an adverse effect on our cost method investments, we do not estimate the investment’s fair value. For all of our investments, if a decline in the fair value of an investment below the carrying value is determined to be other than temporary, such investment is written down to its estimated fair value with a non-cash charge to current earnings. We use “significant other observable inputs” and “significant unobservable inputs” to determine the fair value of privately held entities.

Deferred leasing costs

Costs directly related and essential to our leasing activities are capitalized and amortized on a straight-line basis over the term of the related lease. Costs related to unsuccessful leasing opportunities are expensed.

Deferred financing costs

Fees and costs incurred in obtaining long-term financing are capitalized. Capitalized amounts are amortized over the term of the related loan and the amortization is included in interest expense in the accompanying consolidated statements of income.

Interest rate swap agreements

We utilize interest rate swap agreements to hedge a portion of our exposure to variable interest rates primarily associated with our unsecured senior line of credit and unsecured senior bank term loans. We recognize our interest rate swap agreements as either assets or liabilities on the balance sheet at fair value. The accounting for changes in fair value (i.e., gains or losses) of a derivative instrument depends on whether it has been designated and qualifies as part of a hedging relationship and further, on the type of hedging relationship. For those derivative instruments that are designated and qualify as hedging instruments, a company must designate the hedging instrument, based upon the hedged exposure, as a fair value hedge, a cash flow hedge, or a hedge of a net investment in a foreign operation. We do not use derivatives for trading or speculative purposes, and currently all of our derivatives are designated as hedges. Our interest rate swap agreements are considered cash flow hedges as they are designated and qualify as hedges of the exposure to variability in expected future cash flows. Hedge accounting generally provides for the matching of the timing of gain or loss recognition on the hedging instrument with the recognition of the changes in the earnings effect of the hedged forecasted transactions in a cash flow hedge.

Interest rate swap agreements designated as cash flow hedges involve the receipt of variable rate amounts from a counterparty in exchange for the Company making fixed rate payments over the life of the interest rate swap agreements without exchange of the underlying notional amount. The effective portion of changes in the fair value of our interest rate swap agreements that are designated and that qualify as cash flow hedges is recorded in accumulated other comprehensive income. The amount is subsequently reclassified into earnings in the period during which the hedged forecasted transactions affect earnings.

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Table of Contents

2. Basis of presentation (continued)

Interest rate swap agreements (continued)

The fair value of each interest rate swap agreement is determined using widely accepted valuation techniques including discounted cash flow analyses on the expected cash flows of each derivative. These analyses reflect the contractual terms of the derivatives, including the period to maturity, and use observable market-based inputs, including interest rate curves and implied volatilities (also referred to as “significant other observable inputs”). The fair values of our interest rate swap agreements are determined using the market standard methodology of netting the discounted future fixed cash payments and the discounted expected variable cash receipts. The variable cash receipts are based on an expectation of future interest rates (forward curves) derived from observable market interest rate curves. The fair value calculation also includes an amount for risk of non-performance using “significant unobservable inputs” such as estimates of current credit spreads to evaluate the likelihood of default, which we have determined to be insignificant to the overall fair value of our interest rate swap agreements.

Income taxes

We are organized and qualify as a REIT pursuant to the Internal Revenue Code of 1986, as amended (the “Code”).  Under the Code, a REIT that distributes at least 90% of its REIT taxable income as a dividend to its shareholders each year and that meets certain other conditions is not subject to federal income taxes, but is subject to certain state and local taxes.  We generally distribute 100% or more of our taxable income.  Therefore, no provision for federal income taxes is required.  We file tax returns, including returns for our subsidiaries, with federal, state, and local jurisdictions, including jurisdictions located in the United States, Canada, China, India, and other international locations.  Our tax returns are subject to examination in various jurisdictions for the calendar years 2007 through 2011.

We recognize tax benefits of uncertain tax positions only if it is more likely than not that the tax position will be sustained, based solely on its technical merits, with the taxing authority having full knowledge of all relevant information.  The measurement of a tax benefit for an uncertain tax position that meets the “more likely than not” threshold is based on a cumulative probability model under which the largest amount of tax benefit recognized is the amount with a greater than 50% likelihood of being realized upon ultimate settlement with the taxing authority having full knowledge of all the relevant information.  As of March 31, 2012, there were no unrecognized tax benefits.  We do not anticipate a significant change to the total amount of unrecognized tax benefits within the next 12 months.

Interest expense and penalties, if any, would be recognized in the first period the interest or penalty would begin accruing, according to the provisions of the relevant tax law at the applicable statutory rate of interest.  We did not incur any tax-related interest expense or penalties for the three months ended March 31, 2012 and 2011.

Rental income and tenant recoveries

Rental income from leases with scheduled rent increases, free rent, incentives, and other rent adjustments is recognized on a straight-line basis over the respective lease terms. We include amounts currently recognized as income, and expected to be received in later years, in deferred rent receivable in the accompanying consolidated balance sheets. Amounts received currently, but recognized as income in future years, are included as deferred rent in accounts payable, accrued expenses, and tenant security deposits in our consolidated balance sheets. We commence recognition of rental income at the date the property is ready for its intended use and the tenant takes possession of or controls the physical use of the property.

Tenant recoveries related to reimbursement of real estate taxes, insurance, utilities, repairs and maintenance, and other operating expenses are recognized as revenue in the period the applicable expenses are incurred.

We maintain an allowance for estimated losses that results from the inability of our tenants to make payments required under the terms of the lease and for tenant recoveries due. We recognize additional bad debt expense in future periods if a tenant fails to make a contractual payment beyond any allowance. As of March 31, 2012, we had no allowance for estimated losses.

Interest income

Interest income was approximately $0.6 million and $0.1 million during the three months ended March 31, 2012 and 2011, respectively, and is included in other income in the accompanying consolidated statements of income.

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2. Basis of presentation (continued)

Impact of recently issued accounting standards

In May 2011, the FASB issued an Accounting Standards Update (“ASU”) to substantially converge the guidance in GAAP and International Financial Reporting Standards (“IFRS”) on fair value measurements and disclosures. The ASU changes several aspects of the fair value measurement guidance in FASB Accounting Standards Codification 820, Fair Value Measurement, including (1) the application of the concepts of highest and best use and valuation premise; (2) the introduction of an option to measure groups of offsetting assets and liabilities on a net basis; (3) the incorporation of certain premiums and discounts in fair value measurements; and (4) the measurement of the fair value of certain instruments classified in stockholders’ equity. In addition, the ASU includes several new fair value disclosure requirements, such as information about valuation techniques and significant unobservable inputs used in fair value measurements and a narrative description of the fair value measurements’ sensitivity to changes in significant unobservable inputs. The ASU is effective for public companies during the interim and annual periods, beginning after December 15, 2011. We adopted the ASU as of January 1, 2012. The adoption of the ASU did not impact our condensed consolidated financial statements or related disclosures.

In June 2011, the FASB issued an ASU to make presentation of items within other comprehensive income (“OCI”) more prominent. Entities are required to present items of net income, items of OCI, and total comprehensive income either in a single continuous statement or in two separate but consecutive statements. There no longer exists the option to present OCI in the statement of changes in stockholders’ equity. In December 2011, the FASB decided to defer the requirement that companies present reclassification adjustments for each component of accumulated other comprehensive income (“AOCI”) in both net income and OCI on the face of the financial statements. Reclassifications out of AOCI will be either presented on the face of the financial statement in which OCI is presented or disclosed in the notes to the financial statements. This deferral does not change the requirement to present items of net income, items of OCI, and total comprehensive income in either one continuous statement or two separate consecutive statements. The ASU is effective for public companies during the interim and annual periods, beginning after December 15, 2011. We adopted this guidance as of January 1, 2012, and have presented the condensed consolidated statements of comprehensive income separately from the condensed consolidated statements of income.

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3. Investments in real estate

Our investments in real estate, net, consisted of the following as of March 31, 2012, and December 31, 2011 (dollars in thousands):

March 31, 2012

December 31, 2011

Book
Value

Rentable
Square Feet

Book
Value

Rentable
Square Feet

Land (related to rental properties)

$

506,136

$

510,630

Buildings and building improvements

4,473,337

4,417,093

Other improvements

185,653

185,036

Rental properties

5,165,126

13,641,270

5,112,759

13,567,997

Less: accumulated depreciation

(779,177

)

(742,535

)

Rental properties, net

4,385,949

4,370,224

Construction in progress (“CIP”)/current value-added projects:

Active development

231,164

986,828

198,644

818,020

Active redevelopment

297,031

910,139

281,555

919,857

Projects in India and China

114,207

751,000

106,775

817,000

Generic infrastructure/building improvement projects

124,716

92,338

767,118

2,647,967

679,312

2,554,877

Land/future value-added projects:

Land held for future development

387,309

11,662,000

341,678

10,939,000

Land undergoing preconstruction activities (additional CIP) (1)

547,006

2,244,000

574,884

2,668,000

934,315

13,906,000

916,562

13,607,000

Investment in unconsolidated real estate entity

25,870

414,000

42,342

414,000

Investments in real estate, net (2)

$

6,113,252

30,609,237

$

6,008,440

30,143,874

(1) We generally will not commence ground-up development of any parcels undergoing preconstruction activities without first securing significant pre-leasing for such space. If vertical aboveground construction is not initiated at completion of preconstruction activities, the land parcel will be classified as land held for future development.  The two largest projects included in preconstruction consist of our 1.6 million developable square feet at Alexandria Center™ at Kendall Square in East Cambridge, Massachusetts, and our 407,000 developable square foot site for the second tower at Alexandria Center™ for Life Science – New York City.

(2) In addition to assets included in our gross investment in real estate, we hold options/rights for parcels supporting approximately 3.0 million developable square feet.  These parcels consist of: (a) a parcel supporting the future ground-up development of approximately 385,000 rentable square feet in Alexandria Center™ for Life Science – New York City related to an option under our ground lease; (b) a right to acquire land parcels supporting ground-up development of 636,000 rentable square feet in Edinburgh, Scotland; and (c) an option to increase our land use rights by up to approximately 2.0 million additional developable square feet in China.

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3. Investments in real estate (continued)

Rental properties, net, construction in progress, and land (future value-added projects)

As of March 31, 2012, and December 31, 2011, we had various projects classified as construction in progress, including development and redevelopment projects, and projects in India and China.  As of March 31, 2012, and December 31, 2011, we had 986,828 and 818,020 rentable square feet, respectively, undergoing active ground-up development consisting of vertical aboveground construction of life science properties.  Additionally, as of March 31, 2012, and December 31, 2011, we had 910,139 and 919,857 rentable square feet, respectively, undergoing active redevelopment. We also had construction projects in India and China aggregating approximately 751,000 and 817,000 rentable square feet as of March 31, 2012, and December 31, 2011, respectively.  We are required to capitalize project costs, indirect project costs, and interest during the period an asset is undergoing activities to prepare it for its intended use.  Capitalization of interest ceases after a project is substantially complete and ready for its intended use.  In addition, should construction activity cease, interest would be expensed as incurred.

Additionally, a s of March 31, 2012, and December 31, 2011, we had approximately $387.3 million and $341.7 million, respectively, of land held for future development, aggregating 11.7 million and 10.9 million rentable square feet, respectively.  Land held for future development represents real estate we plan to develop in the future but on which, as of each period presented, no construction activities were ongoing.  As a result, interest, property taxes, insurance, and other costs are expensed as incurred. Additionally, as of March 31, 2012, and December 31, 2011, we had land supporting an aggregate of 2.2 million and 2.7 million rentable square feet of future ground-up development, respectively, undergoing preconstruction activities (consisting of Building Information Modeling [BIM or 3-D virtual modeling], design development and construction drawings, sustainability and energy optimization review, budgeting, planning for future site and infrastructure work, and other activities prior to commencement of vertical construction of aboveground shell and core improvements) that are also classified as construction in progress.  Our objective with preconstruction is to reduce the time it takes to deliver projects to prospective tenants.  Project costs are capitalized as a cost of the project during periods when activities necessary to prepare an asset for its intended use are in progress.  We generally will not commence ground-up development of any parcels undergoing preconstruction activities without first securing significant pre-leasing for such space.  If vertical aboveground construction is not initiated at completion of preconstruction activities, the land parcel will be classified as land held for future development.  The two largest projects included in preconstruction consisted of our 1.6 million developable square foot site at Alexandria Center™ at Kendall Square in Cambridge, Massachusetts, and our 407,000 developable square foot site for the second tower at Alexandria Center™ for Life Science – New York City.

Sale of land parcel

In March 2012, we contributed our 55% ownership interest in a land parcel aggregating 414,000 developable square feet in the Longwood Medical Area into a newly formed joint venture (the “Restated JV”) with National Development and Charles River Realty Investors, and admitted as a 50% member, Clarion Partners, LLC, resulting in a reduction of our ownership interest from 55% to 27.5%.  The transfer of 27.5% of our 55% ownership interest to Clarion Partners, LLC, in this real estate venture is accounted for as an in substance partial sale of an interest in the underlying real estate.  In connection with the sale of 27.5% of our 55% ownership interest in the land parcel, we received a special distribution of approximately $22.3 million which included the recognition of a $1.9 million gain on sale of land and approximately $5.4 million from our share of loan refinancing proceeds.  The land parcel we sold during the three months ended March 31, 2012, did not meet the criteria for discontinued operations since the parcel did not have any significant operations prior to disposition. Pursuant to the presentation and disclosure literature on gains/losses on sales or disposals by REITs required by the SEC, gains or losses on sales or disposals by a REIT that do not qualify as discontinued operations are classified below income from discontinued operations in the income statement. Accordingly for the three months ended March 31, 2012, we classified the $1.9 million gain on sale of land below income from discontinued operations, net, in the condensed consolidated statements of income.  Our 27.5% share of the land was sold at approximately $31 million (including closing costs), or approximately $275 per developable square foot.  Upon formation of the Restated JV, the existing $38.4 million non-recourse secured loan was refinanced with a seven-year (including two one-year extension options) non-recourse $213 million construction loan with initial loan proceeds of $50 million.  We do not expect capital contributions through the completion of the project to exceed the approximate $22.3 million in net proceeds received in this transaction. Construction of this $350 million project is expected to commence early in the second quarter of 2012 and the project is 37% pre-leased to Dana-Farber Cancer Institute, Inc.  In addition, we expect to earn development and other fees of approximately $3.5 million through 2015, and recurring annual property management fees thereafter.

We do not qualify as the primary beneficiary of the Restated JV since we do not have the power to direct the activities of the entity that most significantly impact its economic performance.  The decisions that most significantly impact the entity’s economic performance require both our consent and that of our partners, for all major operating, investing, and financing decisions, as well as decisions involving major expenditures.  As of March 31, 2012, and December 31, 2011, our investment in the unconsolidated real estate entity of approximately $25.9 million and $42.3 million, respectively, was classified as an investment in real estate in the accompanying condensed consolidated balance sheets.

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3. Investments in real estate (continued)

Investment in unconsolidated real estate entity (continued)

Our investment in the unconsolidated real estate entity is adjusted for additional contributions and distributions, the proportionate share of the net earnings or losses, and other comprehensive income or loss.  Distributions, profits, and losses related to this entity are allocated in accordance with the operating agreement.  When circumstances indicate that there may have been a reduction in value of an equity investment, we evaluate the equity investment and any advances made for impairment by estimating our ability to recover our investment from future expected cash flows.  If we determine the loss in value is other than temporary, we recognize an impairment charge to reflect the equity investment and any advances made at fair value.

4. Investments

We hold equity investments in certain publicly traded companies and privately held entities primarily involved in the life science industry.  The following table summarizes our marketable securities (in thousands):

March 31,

December 31,

2012

2011

Adjusted cost of marketable securities

$

1,889

$

2,401

Gross unrealized gains

3,843

4,206

Gross unrealized losses

(259

)

(372

)

Fair value of marketable securities

$

5,473

$

6,235

Investments in “available for sale” securities with gross unrealized losses as of March 31, 2012, had been in a continuous unrealized loss position for less than 12 months.  We have the ability and intent to hold these investments for a reasonable period of time sufficient for a recovery of our investment.  We believe that these unrealized losses are temporary and accordingly we have not recognized an other-than-temporary impairment related to “available for sale” securities as of March 31, 2012.

The following table outlines our investment in privately held entities as of March 31, 2012, and December 31, 2011 (in thousands):

March 31,
2012

December 31,
2011

Investments accounted for under the cost method

$

92,673

$

89,510

Investments accounted for under the equity method

6

32

Total investment in privately held entities

$

92,679

$

89,542

As of March 31, 2012, and December 31, 2011, there were no unrealized losses in our investments in privately held entities.

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5.

Secured and unsecured senior debt

The following table summarizes secured and unsecured senior debt and their respective principal maturities, as of March 31, 2012 (in thousands):

Unsecured Senior Debt

Secured Notes
Payable

Line of
Credit and
Bank Term
Loans

Notes Payable

Convertible
Notes

Total
Consolidated

2012

$

8,170

$

$

$

$

8,170

2013

52,254

52,254

2014

305,598

250

305,848

2015

7,171

167,000

174,171

2016

233,454

750,000

983,454

Thereafter

115,790

600,000

550,000

1,000

1,266,790

Subtotal

722,437

1,517,000

550,000

1,250

2,790,687

Unamortized discounts

(722

)

(464

)

(14

)

(1,200

)

Total

721,715

$

1,517,000

$

549,536

$

1,236

$

2,789,487

The following table summarizes fixed rate/hedged and unhedged floating rate debt as of March 31, 2012 (dollars in thousands):

Fixed Rate/
Hedged

Unhedged
Floating
Rate

Total
Consolidated

Percentage
of
Total

Weighted
Average
Interest Rate at
End of Period
(1)

Weighted
Average
Remaining
Term (Years)

Secured notes payable

$

645,055

$

76,660

$

721,715

25.9%

5.77%

3.9

Unsecured senior notes payable

549,536

549,536

19.7

4.61

10.0

Unsecured senior line of credit (2)

100,000

67,000

167,000

6.0

2.72

2.8

2016 Unsecured Senior Bank Term Loan

750,000

750,000

26.9

3.29

4.3

2017 Unsecured Senior Bank Term Loan

600,000

600,000

21.5

3.84

4.8

Unsecured senior convertible notes

1,236

1,236

5.10

4.3

Total debt

$

2,645,827

$

143,660

$

2,789,487

100.0%

4.28%

5.3

Percentage of total debt

95%

5%

100%

(1)

Represents the contractual interest rate as of the end of the period plus the impact of debt premiums/discounts and our interest rate swap agreements. The weighted average interest rate excludes bank fees and amortization of loan fees.

(2)

Total commitments available for borrowing aggregate $1.5 billion under our unsecured senior line of credit. As of March 31, 2012, we had approximately $1.3 billion available for borrowing under our unsecured senior line of credit.

The maturity dates on our unsecured senior line of credit and unsecured senior bank term loans may be extended at our sole election with delivery of notice to our lenders and may be repaid prior to the maturity dates of these loans without prepayment penalties.  The maturity dates of these loans are as follows, assuming we exercise our sole right to extend the maturity dates:

Applicable
Margin

Stated Maturity
Date

Extension Option

Extended
Maturity Date

Unsecured senior line of credit:

Prior to amendment on April 30, 2012

2.40%

January 2014

Two extensions of six months each

January 2015

Post amendment on April 30, 2012

1.20%

April 2016

Two extensions of six months each

April 2017

2016 Unsecured Senior Bank Term Loan

1.65%

June 2015

One year

June 2016

2017 Unsecured Senior Bank Term Loan

1.50%

January 2016

One year

January 2017

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5. Secured and unsecured senior debt (continued)

Secured notes payable

Future principal payments due on secured notes payable as of March 31, 2012, were as follows (dollars in thousands):

Description

Maturity
Date

Type

Stated
Rate

Effective
Rate (1)

Amount

Other scheduled principal repayments/amortization

$

8,170

2012 Total

$

8,170

San Diego

3/1/13

Insurance Co.

6.21%

6.21%

$

7,934

Suburban Washington, D.C.

9/1/13

CMBS

6.36

6.36

26,093

San Francisco Bay

11/16/13

Other

6.14

6.14

7,527

Other scheduled principal repayments/amortization

10,700

2013 Total

$

52,254

Greater Boston

4/1/14

Insurance Co.

5.26%

5.59%

$

208,684

Suburban Washington, D.C.

4/20/14

Bank

2.27

2.27

76,000

San Diego

7/1/14

Bank

6.05

4.88

6,458

San Diego

11/1/14

Bank

5.39

4.00

7,495

Seattle

11/18/14

Other

5.01

5.01

240

Other scheduled principal repayments/amortization

6,721

2014 Total

$

305,598

Other scheduled principal repayments/amortization

$

7,171

2015 Total

$

7,171

Greater Boston, San Francisco Bay, and San Diego

1/1/16

CMBS

5.73%

5.73%

$

75,501

Greater Boston and Greater NYC

4/1/16

CMBS

5.82

5.82

29,389

San Francisco Bay

8/1/16

CMBS

6.35

6.35

126,715

Other scheduled principal repayments/amortization

1,849

2016 Total

$

233,454

Thereafter

115,790

Subtotal

722,437

Unamortized discounts

(722

)

Total

$

721,715

(1) Represents the contractual interest rate as of the end of the period plus the impact of debt premiums/discounts. The effective rate excludes bank fees and amortization of loan fees.

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Table of Contents

5. Secured and unsecured senior debt (continued)

4.60% Unsecured senior notes payable

In February 2012, we completed a public $550 million offering of our unsecured senior notes payable at a stated interest rate of 4.60%.  The unsecured senior notes payable were priced at 99.915% of the principal amount with a yield to maturity of 4.61% and are due April 1, 2022.  The unsecured senior notes payable are unsecured obligations of the Company and are fully and unconditionally guaranteed by Alexandria Real Estate Equities, L.P., a wholly owned subsidiary of the Company.  The unsecured senior notes payable rank equally in right of payment with all other senior unsecured indebtedness. However, the unsecured senior notes payable are effectively subordinated to existing and future mortgages and other secured indebtedness (to the extent of the value of the collateral securing such indebtedness) and to all existing and future preferred equity and liabilities, whether secured or unsecured, of the Company’s subsidiaries, other than Alexandria Real Estate Equities, L.P.  We used the net proceeds of this offering to prepay the outstanding principal balance of $250 million on our 2012 unsecured senior bank term loan (“2012 Unsecured Senior Bank Term Loan”) and to reduce the outstanding borrowings on our unsecured senior line of credit.

The requirements of the key financial covenants under our unsecured senior notes payable are as follows:

Covenant Ratios (1)

Requirement

Actual (2)

Total Debt to Total Assets

Less than or equal to 60%

37%

Consolidated EBITDA to Interest Expense

Greater than or equal to 1.5x

5.4x

Unencumbered Total Asset Value to Unsecured Debt

Greater than or equal to 150%

279%

Secured Debt to Total Assets

Less than or equal to 40%

10%

(1)

For a definition of the ratios used in the table above and related footnotes, refer to the Indenture dated February 29, 2012, which governs the unsecured senior notes payable, which was filed as an exhibit to our report filed with the SEC.

(2)

Actual covenants are calculated pursuant to the specific terms of the agreement.

In addition, the terms of the agreement, among other things, limit the ability of the Company, Alexandria Real Estate Equities, L.P., and the Company’s other subsidiaries to (1) consummate a merger, or consolidate or sell all or substantially all of the Company’s assets, and (2) incur certain secured or unsecured indebtedness.

Unsecured senior line of credit and unsecured senior bank term loans

In April 2012, we amended our $1.5 billion unsecured senior line of credit, with Merrill Lynch, Pierce, Fenner & Smith Incorporated, J.P. Morgan Securities Inc., and Citigroup Global Markets Inc. as joint lead arrangers, and certain lenders, to extend the maturity date of our unsecured senior line of credit, provide an accordion option for up to an additional $500 million, and reduce the interest rate for outstanding borrowings. The maturity date of the unsecured senior line of credit was extended to April 2017, assuming we exercise our sole right to extend this maturity date twice by an additional six months after each exercise. Borrowing under the unsecured senior line of credit will bear interest at London Interbank Offered Rate (“LIBOR”) or the base rate specified in the amended credit agreement, plus in either case a specified margin (the “Applicable Margin”). The Applicable Margin for LIBOR borrowings under the unsecured senior line of credit was set at 1.20%, down from 2.40% in effect immediately prior to the modification. In addition to the Applicable Margin, our unsecured senior line of credit is subject to an annual facility fee of 0.25%.  In connection with the modification of our unsecured senior line of credit in April 2012, we recognized a loss on early extinguishment of debt of approximately $1.6 million related to the write-off of a portion of unamortized loan fees.

During the three months ended March 31, 2012, we recognized a loss on early extinguishment of debt of approximately $0.6 million related to the write-off of unamortized loan fees, as a result of the early repayment of $250 million of our 2012 Unsecured Senior Bank Term Loan.

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Table of Contents

5. Secured and unsecured senior debt (continued)

Unsecured senior line of credit and unsecured senior bank term loans (continued)

The following table summarizes balances outstanding under our unsecured senior line of credit and unsecured senior bank term loans as of March 31, 2012, and December 31, 2011 (dollars in thousands):

March 31, 2012

December 31, 2011

Applicable
Margin

Balance

Interest
Rate (1)

Balance

Interest
Rate (1)

Unsecured senior line of credit

2.30%

$

167,000

2.72%

$

370,000

2.59%

2012 Unsecured Senior Bank Term Loan

N/A

N/A

250,000

5.63%

2016 Unsecured Senior Bank Term Loan

1.65%

750,000

3.29%

750,000

3.28%

2017 Unsecured Senior Bank Term Loan

1.50%

600,000

3.84%

600,000

1.93%

$

1,517,000

$

1,970,000

(1)

Represents the contractual interest rate as of the end of the period plus the impact of debt premiums/discounts and our interest rate swap agreements. The interest rate excludes bank fees and amortization of loan fees.

The requirements of the key financial covenants under our unsecured senior line of credit and unsecured senior bank term loans based upon agreements effective April 30, 2012, are as follows:

Covenant Ratios (1)

Requirement

Actual (2)

Total Debt to Total Assets (3)

Less than or equal to 60.0% (4)

34%

Consolidated EBITDA to Interest Expense (5)

Greater than or equal to 1.50x

2.5x

Secured Debt to Total Assets (6)

Less than or equal to 40.0% (4)

9%

Unsecured Leverage Ratio

Less than or equal to 60.0% (4)

36%

Unsecured Interest Coverage Ratio

Greater than or equal to 1.75x

8.9x

(1)

For a definition of the ratios used in the table above and related footnotes, refer to the (“Amended Credit Agreement”) dated as of April 30, 2012, which will be filed as an exhibit to the Company’s Quarterly Report on Form 10-Q for the quarter ending June 30, 2012.

(2)

Actual covenants are calculated pursuant to the specific terms of each agreement.

(3)

Under the Amended Credit Agreement, this ratio is referred to as the Leverage Ratio.

(4)

These ratios may increase by an additional 5% in connection with a Material Acquisition, as defined, for up to four quarters.

(5)

Under the Amended Credit Agreement, this ratio is referred to as the Fixed Charge Coverage Ratio.

(6)

Under the Amended Credit Agreement, this ratio is referred to as the Secured Debt Ratio.

In addition, the terms of the unsecured senior line of credit and unsecured senior bank term loan agreements, among other things, limit the ability of the Company, Alexandria Real Estate Equities, L.P., and the Company’s subsidiaries to (1) consummate a merger, or consolidate or sell all or substantially all of the Company’s assets, and (2) incur certain secured or unsecured indebtedness.

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Table of Contents

5. Secured and unsecured debt (continued)

Unsecured senior convertible notes

The following tables summarize the balances, significant terms, and components of interest cost recognized (excluding amortization of loan fees and before the impact of capitalized interest) on our unsecured senior convertible notes (dollars in thousands):

8.00% Unsecured Senior
Convertible Notes

3.70% Unsecured Senior
Convertible Notes

March 31,

December 31,

March 31,

December 31,

2012

2011

2012

2011

Principal amount

$

250

$

250

$

1,000

$

84,801

Unamortized discount

(14

)

(15

)

(77

)

Net carrying amount of liability component

$

236

$

235

$

1,000

$

84,724

Carrying amount of equity component

$

27

$

27

$

95

$

8,080

Number of shares on which the aggregate consideration to be delivered on conversion is determined

6,087

6,087

N/A

(1)

N/A

(1)

Issuance date

April 2009

January 2007

Stated interest rate

8.00%

3.70%

Effective interest rate at March 31, 2012

11.00%

3.70%

Conversion rate per $1,000 principal value of unsecured senior convertible notes, as adjusted

24.3480

8.5207

8.00% Unsecured Senior
Convertible Notes

3.70% Unsecured Senior
Convertible Notes

Three Months Ended

Three Months Ended

March 31,

March 31,

2012

2011

2012

2011

Contractual interest

$

5

$

5

$

139

$

2,192

Amortization of discount on liability component

1

1

77

1,267

Total interest cost

$

6

$

6

$

216

$

3,459

(1) Our 3.70% unsecured senior convertible notes (“3.70% Unsecured Senior Convertible Notes”) require that upon conversion, the entire principal amount is to be settled in cash, and any excess value above the principal amount, if applicable, is to be settled in shares of our common stock.  Based on the March 31, 2012, and December 31, 2011, closing prices of our common stock of $73.13 and $68.97, respectively, and the conversion price of our 3.70% Unsecured Senior Convertible Notes of $117.36 as of March 31, 2012, and December 31, 2011, the if-converted value of the notes did not exceed the principal amount as of March 31, 2012, and December 31, 2011, and accordingly, no shares of our common stock would have been issued if the notes had been settled on March 31, 2012, or December 31, 2011.

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Table of Contents

5. Secured and unsecured debt (continued)

3.70% unsecured senior convertible notes

In January 2007, we completed a private offering of $460 million of 3.70% Unsecured Senior Convertible Notes.  On or after January 15, 2012, we have the right to redeem the 3.70% Unsecured Senior Convertible Notes, in whole or in part, at any time and from time to time, for cash equal to 100% of the principal amount of the 3.70% Unsecured Senior Convertible Notes to be redeemed, plus any accrued and unpaid interest to, but excluding, the redemption date.  Holders of the 3.70% Unsecured Senior Convertible Notes may require us to repurchase their notes, in whole or in part, on January 15, 2017 and 2022, for cash equal to 100% of the principal amount of the notes to be purchased plus any accrued and unpaid interest to, but excluding, the repurchase date.

As of March 31, 2012, the 3.70% Unsecured Senior Convertible Notes had a conversion rate of approximately 8.5207 shares of common stock per $1,000 principal amount of the 3.70% Unsecured Senior Convertible Notes, which is equivalent to a conversion price of approximately $117.36 per share of our common stock.

During the three months ended March 31, 2011, we recognized an aggregate loss on early extinguishment of debt of approximately $2.5 million related to the repurchase, in privately negotiated transactions, of approximately $96.1 million of certain of our 3.70% Unsecured Senior Convertible Notes.

During the year ended December 31, 2011, we repurchased, in privately negotiated transactions, additional 3.70% Unsecured Senior Convertible Notes aggregating approximately $217.1 million in principal amount, at an aggregate cash price of approximately $221.4 million (the “2011 3.70% Repurchases”).  Upon completion of the 2011 3.70% Repurchases, the total value of the consideration of the 2011 3.70% Repurchases was allocated to the extinguishment of the liability component equal to the fair value of that component immediately prior to extinguishment, with the difference between this allocation and the net carrying amount of the liability component and unamortized debt issuance costs recognized as a loss on early extinguishment of debt.  The remaining settlement consideration of approximately $3.0 million was allocated to the reacquisition of the equity component and was recognized as a reduction of Alexandria Real Estate Equities, Inc.’s stockholders’ equity.  As a result of the 2011 3.70% Repurchases, we recognized an aggregate loss on early extinguishment of debt of approximately $5.2 million, including approximately $0.7 million in unamortized issuance costs during the year ended December 31, 2011.

During January 2012, we repurchased approximately $83.8 million in principal amount of our 3.70% Unsecured Senior Convertible Notes at par, pursuant to options exercised by holders thereof under the indenture governing the notes.  We did not recognize a gain or loss as a result of this repurchase.  As of March 31, 2012, $1.0 million of our 3.70% Unsecured Senior Convertible Notes remained outstanding.

The following table outlines our interest expense for the three months ended March 31, 2012 and 2011 (in thousands):

Three Months Ended

March 31,

2012

2011

Gross interest

$

31,493

$

31,003

Capitalized interest

(15,266

)

(13,193

)

Interest expense (1)

$

16,227

$

17,810

(1) Includes interest expense related to and classified in income from discontinued operations in the accompanying condensed consolidated statements of income.

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6. Interest rate swap agreements

During the three months ended March 31, 2012 and 2011, our interest rate swap agreements were used primarily to hedge the variable cash flows associated with certain of our existing LIBOR-based variable rate debt, including our unsecured senior line of credit and unsecured senior bank term loans.  The ineffective portion of the change in fair value of our interest rate swap agreements is required to be recognized directly in earnings. During the three months ended March 31, 2012 and 2011, our interest rate swap agreements were 100% effective; because of this, no hedge ineffectiveness was recognized in earnings.  The effective portion of changes in the fair value of our interest rate swap agreements that are designated and that qualify as cash flow hedges is recorded in accumulated other comprehensive loss.

The following table reflects the effective portion of the unrealized loss recognized in other comprehensive loss for our interest rate swaps related to the change in fair value for the three months ended March 31, 2012 and 2011 (in thousands):

March 31,

2012

2011

Unrealized (loss) gain recognized in other comprehensive loss related to the effective portion of changes in the fair value of our interest rate swap agreements

$

(4,073

)

$

300

Losses are subsequently reclassified into earnings in the period during which the hedged forecasted transactions affect earnings.  During the next 12 months, we expect to reclassify approximately $19.8 million from accumulated other comprehensive loss to interest expense as an increase to interest expense.  The following table indicates the classification in the condensed consolidated statements of income and the effective portion of the loss reclassified from accumulated other comprehensive income into earnings for our cash flow hedge contracts for the three months ended March 31, 2012 and 2011 (in thousands):

March 31,

2012

2011

Loss reclassified from other comprehensive loss to earnings as an increase to interest expense (effective portion)

$

5,775

$

5,439

As of March 31, 2012, and December 31, 2011, our interest rate swap agreements were classified in accounts payable, accrued expenses, and tenant security deposits based upon their respective fair values, aggregating a liability balance of approximately $31.3 million and $33.0 million, respectively, which included accrued interest and adjustments for non-performance risk, with the offsetting adjustment reflected as unrealized loss in accumulated other comprehensive loss in total equity.  We have not posted any collateral related to our interest rate swap agreements.  We had the following outstanding interest rate swap agreements that were designated as cash flow hedges of interest rate risk as of March 31, 2012 (dollars in thousands):

Notional Amount in

Effect as of

Transaction
Date

Effective
Date

Termination
Date

Interest Pay
Rate (1)

Fair Value as of
March 31, 2012

March 31,
2012

December 31,
2013

December 31,
2014

December 2006

December 29, 2006

March 31, 2014

4.990

%

$

(4,582

)

$

50,000

$

50,000

$

October 2007

October 31, 2007

September 30, 2012

4.546

(1,082

)

50,000

October 2007

October 31, 2007

September 30, 2013

4.642

(3,243

)

50,000

October 2007

July 1, 2008

March 31, 2013

4.622

(1,083

)

25,000

October 2007

July 1, 2008

March 31, 2013

4.625

(1,084

)

25,000

December 2006

November 30, 2009

March 31, 2014

5.015

(6,910

)

75,000

75,000

December 2006

November 30, 2009

March 31, 2014

5.023

(6,922

)

75,000

75,000

December 2006

December 31, 2010

October 31, 2012

5.015

(2,829

)

100,000

December 2011

December 30, 2011

December 31, 2012

0.480

(388

)

250,000

December 2011

December 30, 2011

December 31, 2012

0.480

(388

)

250,000

December 2011

December 30, 2011

December 31, 2012

0.480

(194

)

125,000

December 2011

December 30, 2011

December 31, 2012

0.480

(194

)

125,000

December 2011

December 30, 2011

December 31, 2012

0.495

(208

)

125,000

December 2011

December 30, 2011

December 31, 2012

0.508

(220

)

125,000

December 2011

December 31, 2012

December 31, 2013

0.640

(457

)

250,000

December 2011

December 31, 2012

December 31, 2013

0.640

(458

)

250,000

December 2011

December 31, 2012

December 31, 2013

0.644

(234

)

125,000

December 2011

December 31, 2012

December 31, 2013

0.644

(234

)

125,000

December 2011

December 31, 2013

December 31, 2014

0.977

(284

)

250,000

December 2011

December 31, 2013

December 31, 2014

0.976

(284

)

250,000

Total

$

(31,278

)

$

1,450,000

$

950,000

$

500,000

(1) In addition to the interest pay rate, borrowings outstanding under our unsecured senior line of credit and unsecured senior bank term loans include an applicable margin shown on page 17.

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Table of Contents

7. Fair value of financial instruments

We are required to disclose fair value information about all financial instruments, whether or not recognized in the balance sheet, for which it is practicable to estimate fair value.  We measure and disclose the estimated fair value of financial assets and liabilities utilizing a fair value hierarchy that distinguishes between data obtained from sources independent of the reporting entity and the reporting entity’s own assumptions about market participant assumptions.  This hierarchy consists of three broad levels as follows: (1) quoted prices in active markets for identical assets or liabilities, (2) “significant other observable inputs,” and (3) “significant unobservable inputs.”  “Significant other observable inputs” can include quoted prices for similar assets or liabilities in active markets, as well as inputs that are observable for the asset or liability, such as interest rates, foreign exchange rates, and yield curves that are observable at commonly quoted intervals.  “Significant unobservable inputs” are typically based on an entity’s own assumptions, since there is little, if any, related market activity. In instances in which the determination of the fair value measurement is based on inputs from different levels of the fair value hierarchy, the level in the fair value hierarchy within which the entire fair value measurement falls is based on the lowest level of input that is significant to the fair value measurement in its entirety. Our assessment of the significance of a particular input to the fair value measurement in its entirety requires judgment and considers factors specific to the asset or liability.  There were no transfers between the levels in the fair value hierarchy during the three months ended March 31, 2012.

The following tables set forth the assets and liabilities that we measure at fair value on a recurring basis by level within the fair value hierarchy as of March 31, 2012, and December 31, 2011 (in thousands):

March 31, 2012

Description

Total

Quoted Prices in
Active Markets
for Identical
Assets

“Significant
Other
Observable
Inputs”

“Significant
Unobservable
Inputs”

Assets:

Marketable securities

$

5,473

$

5,473

$

$

Liabilities:

Interest rate swap agreements

$

31,278

$

$

31,278

$

December 31, 2011

Description

Total

Quoted Prices in
Active Markets
for Identical
Assets

“Significant
Other
Observable
Inputs”

“Significant
Unobservable
Inputs”

Assets:

Marketable securities

$

6,235

$

6,235

$

$

Liabilities:

Interest rate swap agreements

$

32,980

$

$

32,980

$

The carrying amounts of cash and cash equivalents, restricted cash, tenant receivables, other assets, accounts payable, accrued expenses, and tenant security deposits approximate fair value.  As further described in Notes 4 and 6, our marketable securities and our interest rate swap agreements, respectively, have been recorded at fair value. The fair values of our secured notes payable, unsecured senior notes payable, unsecured senior line of credit, unsecured senior bank term loans, and unsecured senior convertible notes were estimated using widely accepted valuation techniques including discounted cash flow analyses of “significant other observable inputs” such as available market information on discount and borrowing rates with similar terms and maturities.  Because the valuations of our financial instruments are based on these types of estimates, the actual fair value of our financial instruments may differ materially if our estimates do not prove to be accurate.  Additionally, the use of different market assumptions or estimation methods may have a material effect on the estimated fair value amounts.

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Table of Contents

7. Fair value of financial instruments (continued)

As of March 31, 2012, and December 31, 2011, the book and fair values of our marketable securities, interest rate swap agreements, secured notes payable, unsecured senior notes payable, unsecured senior line of credit, unsecured senior bank term loan, and unsecured senior convertible notes were as follows (in thousands):

March 31, 2012

December 31, 2011

Book Value

Fair Value

Book Value

Fair Value

Marketable securities

$

5,473

$

5,473

$

6,235

$

6,235

Interest rate swap agreements

31,278

31,278

32,980

32,980

Secured notes payable

721,715

816,993

724,305

810,128

Unsecured senior notes payable

549,536

542,003

Unsecured senior line of credit

167,000

172,563

370,000

378,783

Unsecured senior bank term loans

1,350,000

1,363,034

1,600,000

1,603,917

Unsecured senior convertible notes

1,236

1,252

84,959

85,221

8. Earnings per share

We use income from continuing operations attributable to Alexandria Real Estate Equities, Inc.’s common stockholders as the “control number” in determining whether potential common shares, including potential common shares issuable upon conversion of our 8.00% Unsecured Senior Convertible Notes, are dilutive or antidilutive to earnings (loss) per share.  Pursuant to the presentation and disclosure literature on gains or losses on sales or disposals by REITs and earnings per share required by the SEC and the FASB, gains or losses on sales or disposals by a REIT that do not qualify as discontinued operations are classified below income from discontinued operations in the condensed consolidated statements of income and included in the numerator for the computation of earnings per share for income from continuing operations.

The sale of land parcel related to our investment in unconsolidated real estate entity during the three months ended March 31, 2012, did not meet the criteria for discontinued operations because the unconsolidated real estate entity did not have significant operations prior to disposition. Accordingly, for the three months ended March 31, 2012, we classified the $1.9 million gain on sale of land parcel below (loss) income from discontinued operations, net in the accompanying condensed consolidated statements of income, and included the gain in income from continuing operations attributable to Alexandria Real Estate Equities, Inc.’s common stockholders, the “control number,” or numerator for computation of earnings per share.

We account for unvested restricted stock awards that contain nonforfeitable rights to dividends as participating securities and include these securities in the computation of earnings per share using the two-class method.  Under the two-class method, we allocate net income after preferred stock dividends, preferred stock redemption charge, and amounts attributable to noncontrolling interests to common stockholders and unvested restricted stock awards based on their respective participation rights to dividends declared (or accumulated) and undistributed earnings.  Diluted earnings per share is computed using the weighted average shares of common stock outstanding determined for the basic earnings per share computation plus the effect of any dilutive securities, including the dilutive effect of stock options using the treasury stock method.

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Table of Contents

8. Earnings per share (continued)

The table below is a reconciliation of the numerators and denominators of the basic and diluted earnings per share computations for the three months ended March 31, 2012 and 2011 (dollars in thousands, except per share amounts):

Three Months Ended
March 31,

Earnings per share

2012

2011

Income from continuing operations

$

30,940

$

32,475

Gain on sale of land parcel

1,864

Net income attributable to noncontrolling interests

(711

)

(929

)

Dividends on preferred stock

(7,483

)

(7,089

)

Preferred stock redemption charge

(5,978

)

Net income attributable to unvested restricted stock awards

(235

)

(242

)

Income from continuing operations attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – basic and diluted

18,397

24,215

(Loss) income from discontinued operations, net

(29

)

150

Net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – basic and diluted

$

18,368

$

24,365

Weighted average shares of common stock outstanding – basic

61,507,807

54,948,345

Effect of dilutive stock options

1,160

19,410

Weighted average shares of common stock outstanding – diluted

61,508,967

54,967,755

Earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – basic

Continuing operations

$

0.30

$

0.44

Discontinued operations, net

Earnings per share – basic

$

0.30

$

0.44

Earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – diluted

Continuing operations

$

0.30

$

0.44

Discontinued operations, net

Earnings per share – diluted

$

0.30

$

0.44

For purposes of calculating diluted earnings per share, we did not assume conversion of our 8.00% Unsecured Senior Convertible Notes for the three months ended March 31, 2012 and 2011, since the impact was antidilutive to earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common stockholders from continuing operations during those periods.

For purposes of calculating diluted earnings per share, we did not assume conversion of our Series D Convertible Preferred Stock for the three months ended March 31, 2012 and 2011, since the impact was antidilutive to earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common stockholders from continuing operations during those periods.

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Table of Contents

8. Earnings per share (continued)

Our calculation of weighted average diluted shares will include additional shares related to our 3.70% Unsecured Senior Convertible Notes when the average market price of our common stock is higher than the conversion price ($117.36 as of March 31, 2012). The number of additional shares that will be included in the weighted average diluted shares is equal to the number of shares that would be issued upon the settlement of the 3.70% Unsecured Senior Convertible Notes, assuming the settlement occurred at the end of the reporting period pursuant to the treasury stock method.  For the three months ended March 31, 2012 and 2011, the weighted average shares of common stock related to our 3.70% Unsecured Senior Convertible Notes have been excluded from diluted weighted average shares of common stock because the average market price of our common stock was lower than the conversion price and the impact of conversion would have been antidilutive to earnings per share attributable to Alexandria Real Estate Equities, Inc.’s common stockholders from continuing operations during those periods.

9. Net income attributable to Alexandria Real Estate Equities, Inc.

The following table shows income (loss) from continuing and discontinued operations attributable to Alexandria Real Estate Equities, Inc. for the three months ended March 31, 2012 and 2011 (in thousands):

Three Months Ended
March 31,

2012

2011

Income from continuing operations

$

30,940

$

32,475

Gain on sale of land parcel

1,864

Less: net income attributable to noncontrolling interests

(711

)

(929

)

Income from continuing operations attributable to Alexandria Real Estate Equities, Inc.

32,093

31,546

(Loss) income from discontinued operations attributable to Alexandria Real Estate Equities, Inc., net

(29

)

150

Less: net income from discontinued operations attributable to noncontrolling interests

Net income attributable to Alexandria Real Estate Equities, Inc.

$

32,064

$

31,696

10. Stockholders’ equity

6.45% series E preferred stock offering

In March 2012, we completed a public offering of 5,200,000 shares of our 6.45% series E cumulative redeemable preferred stock (“Series E Preferred Stock”).  The shares were issued at a price of $25.00 per share, resulting in net proceeds of approximately $124.9 million (after deducting underwriters’ discounts and other offering costs).  The proceeds were initially used to reduce the outstanding borrowings under our unsecured senior line of credit. We then borrowed funds under our unsecured senior line of credit to redeem our 8.375% series C cumulative redeemable preferred stock in April 2012 (“Series C Preferred Stock”).  The dividends on our Series E Preferred Stock are cumulative and accrue from the date of original issuance.  We pay dividends quarterly in arrears at an annual rate of 6.45%, or $1.6125 per share.  Our Series E Preferred Stock has no stated maturity date, is not subject to any sinking fund or mandatory redemption provisions, and is not redeemable before March 15, 2017, except to preserve our status as a REIT.  On and after March 15, 2017, we may, at our option, redeem the Series E Preferred Stock, in whole or in part, at any time for cash at a redemption price of $25.00 per share, plus any accrued and unpaid dividends on the Series E Preferred Stock up to, but excluding, the redemption date.  In addition, upon the occurrence of a change of control, we may, at our option, redeem the Series E Preferred Stock, in whole or in part, within 120 days after the first date on which such change of control occurred, by paying $25.00 per share, plus any accrued and unpaid dividends up to, but excluding, the date of redemption.  Investors in our Series E Preferred Stock generally have no voting rights.

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Table of Contents

10. Stockholders’ equity (continued)

8.375% series C preferred stock redemption

In March 2012, we called for redemption all 5,185,500 outstanding shares of our 8.375% Series C Preferred Stock at a redemption price equal to $25.00 per share on the redemption date of April 13, 2012.  Separately, we announced in March 2012, that we would pay a dividend on the Series C Preferred Stock for the holders of record as of March 30, 2012.  The preferred stock redemption liability included in the accompanying condensed consolidated balance sheet as of March 31, 2012, reflects the Series C Preferred Stock at its redemption amount of $129.6 million, excluding the portion relating to the accumulated and unpaid dividends.  As a result of calling our Series C Preferred Stock for redemption in March 2012, we recognized a preferred stock redemption charge of approximately $6.0 million for costs related to the issuance and redemption of our Series C Preferred Stock.  This amount represents the excess of the fair value of the consideration transferred to the holders over the carrying amount of the preferred stock.  The accumulated and unpaid dividends relating to the Series C Preferred Stock as of March 31, 2012, have been included in dividends payable in the accompanying condensed consolidated balance sheet.  The Series C Preferred Stock was redeemed on April 13, 2012.

Dividends

In March 2012, we declared a cash dividend on our common stock aggregating $30.4 million ($0.49 per share) for the three months ended March 2012.  In March 2012, we also declared cash dividends on our Series C Preferred Stock aggregating $2.7 million ($0.5234375 per share), for the period from January 15, 2012, through April 15, 2012.  Additionally, on March 31, 2012, we declared cash dividends on our Series D Convertible Preferred Stock aggregating approximately $4.4 million ($0.4375 per share), for the period from January 15, 2012, through April 15, 2012.

Accumulated other comprehensive loss

Accumulated other comprehensive loss attributable to Alexandria Real Estate Equities, Inc. consists of the following (in thousands):

March 31,

December 31,

2012

2011

Unrealized gain on marketable securities

$

3,584

$

3,834

Unrealized loss on interest rate swap agreements

(31,278

)

(32,980

)

Unrealized gain (loss) on foreign currency translation

4,606

(5,365

)

Total

$

(23,088

)

$

(34,511

)

11. Noncontrolling interests

Noncontrolling interests represent the third-party interests in certain entities in which we have a controlling interest. These entities own seven properties and three development parcels as of March 31, 2012, and are included in our condensed consolidated financial statements.  Noncontrolling interests are adjusted for additional contributions and distributions, the proportionate share of the net earnings or losses, and other comprehensive income or loss.  Distributions, profits, and losses related to these entities are allocated in accordance with the respective operating agreements.

Certain of our noncontrolling interests have the right to require us to redeem their ownership interests in the respective entities.  We classify these ownership interests in the entities as redeemable noncontrolling interests outside of total equity in the accompanying condensed consolidated balance sheets.  Redeemable noncontrolling interests are adjusted for additional contributions and distributions, the proportionate share of the net earnings or losses, and other comprehensive income or loss. Distributions, profits, and losses related to these entities are allocated in accordance with the respective operating agreements.  If the carrying amount of a redeemable noncontrolling interest is less than the maximum redemption value at the balance sheet date, such amount is adjusted to the maximum redemption value.  Subsequent declines in the redemption value are recognized only to the extent that previously recorded increases have been recorded.  As of March 31, 2012, and December 31, 2011, our redeemable noncontrolling interest balances were approximately $15.8 million and $16.0 million, respectively.   Our remaining noncontrolling interests, aggregating approximately $43.4 million and $42.6 million as of March 31, 2012, and December 31, 2011, respectively, do not have rights to require us to purchase their ownership interests and are classified in total equity in the accompanying condensed consolidated balance sheets.

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Table of Contents

12. Discontinued operations

The following is a summary of income from discontinued operations, net, and net assets of discontinued operations (in thousands):

Three Months Ended

March 31,

2012

2011

Total revenue

$

53

$

389

Operating expenses

82

82

Revenue less operating expenses

(29

)

307

Interest expense

32

Depreciation expense

125

(Loss) income from discontinued operations, net

$

(29

)

$

150

March 31,

December 31,

2012

2011

Investment in real estate “held for sale,” net

$

15,043

$

15,011

Other assets

143

197

Total assets

15,186

15,208

Total liabilities

691

298

Net assets of discontinued operations

$

14,495

$

14,910

Loss from discontinued operations, net, for the three months ended March 31, 2012, includes the results of the operations of three operating properties that were classified as “held for sale” as of March 31, 2012.  Income from discontinued operations, net, for the three months ended March 31, 2011, includes the results of operations of three properties that were classified as “held for sale” as of March 31, 2012, and the results of operations of one property sold during the three months ended December 31, 2011.

13. Condensed consolidating financial information

Alexandria Real Estate Equities, Inc. (the “Issuer”) has sold certain securities registered under the Securities Act, as amended, that are fully and unconditionally guaranteed by Alexandria Real Estate Equities, L.P. (the “LP”), an indirectly wholly owned subsidiary of the Issuer.  The Company’s other subsidiaries, including, but not limited to, the subsidiaries that own substantially all of its real estate (collectively, the “Combined Non-Guarantor Subsidiaries”) will not provide a guarantee of such securities, including the subsidiaries that are partially or wholly owned by the LP.  The following condensed consolidating financial information presents the condensed consolidating balance sheets as of March 31, 2012, and December 31, 2011, and the condensed consolidating statements of income, comprehensive income, and cash flows for three months ended March 31, 2012 and 2011, for the Issuer, the guarantor subsidiary (the LP), the Combined Non-Guarantor Subsidiaries, consolidating adjustments, and consolidated amounts.  Each entity in the condensed consolidating financial information follows the same accounting policies described in our condensed consolidated financial statements, except for the use of the equity method of accounting to reflect ownership interest in subsidiaries that are eliminated upon consolidation.

29



Table of Contents

Condensed Consolidating Balance Sheet

as of March 31, 2012
(In thousands)

(Unaudited)

Alexandria
Real Estate
Equities, Inc.
(Issuer)

Alexandria
Real Estate
Equities, L.P.
(Guarantor
Subsidiary)

Combined
Non-
Guarantor
Subsidiaries

Eliminations

Consolidated

Assets

Investments in real estate

$

63,184

$

$

6,829,245

$

$

6,892,429

Less: accumulated depreciation

(18,437

)

(760,740

)

(779,177

)

Investments in real estate, net

44,747

6,068,505

6,113,252

Cash and cash equivalents

17,820

1,474

58,067

77,361

Restricted cash

43

39,760

39,803

Tenant receivables

21

8,815

8,836

Deferred rent

1,719

148,796

150,515

Deferred leasing and financing costs, net

28,333

115,421

143,754

Investments

12,960

85,192

98,152

Investments in and advances to affiliates

5,556,146

5,119,699

107,414

(10,783,259

)

Intercompany note receivable

2,195

(2,195

)

Other assets

19,546

66,872

86,418

Total assets

$

5,670,570

$

5,134,133

$

6,698,842

$

(10,785,454

)

$

6,718,091

Liabilities, Noncontrolling Interests, and Equity

Secured notes payable

$

$

$

721,715

$

$

721,715

Unsecured senior notes payable

549,536

549,536

Unsecured senior line of credit

167,000

167,000

Unsecured senior bank term loans

1,350,000

1,350,000

Unsecured senior convertible notes

1,236

1,236

Accounts payable, accrued expenses, and tenant security deposits

56,713

266,289

323,002

Dividends payable

36,677

285

36,962

Preferred stock redemption liability

129,638

129,638

Intercompany note payable

2,195

(2,195

)

Total liabilities

2,290,800

990,484

(2,195

)

3,279,089

Redeemable noncontrolling interests

15,819

15,819

Alexandria Real Estate Equities, Inc.’s stockholders’ equity

3,379,770

5,134,133

5,649,126

(10,783,259

)

3,379,770

Noncontrolling interests

43,413

43,413

Total equity

3,379,770

5,134,133

5,692,539

(10,783,259

)

3,423,183

Total liabilities, noncontrolling interests, and equity

$

5,670,570

$

5,134,133

$

6,698,842

$

(10,785,454

)

$

6,718,091

30



Table of Contents

Condensed Consolidating Balance Sheet

as of December 31, 2011
(In thousands)

(Unaudited)

Alexandria
Real Estate
Equities, Inc.
(Issuer)

Alexandria
Real Estate
Equities, L.P.
(Guarantor
Subsidiary)

Combined
Non-
Guarantor
Subsidiaries

Eliminations

Consolidated

Assets

Investments in real estate

$

64,880

$

$

6,686,095

$

$

6,750,975

Less: accumulated depreciation

(18,085

)

(724,450

)

(742,535

)

Investments in real estate, net

46,795

5,961,645

6,008,440

Cash and cash equivalents

10,608

67,931

78,539

Restricted cash

40

23,292

23,332

Tenant receivables

12

7,468

7,480

Deferred rent

1,615

140,482

142,097

Deferred leasing and financing costs, net

25,364

110,186

135,550

Investments

13,385

82,392

95,777

Investments in and advances to affiliates

5,443,778

5,020,525

105,284

(10,569,587

)

Intercompany note receivable

2,195

(2,195

)

Other assets

18,643

64,271

82,914

Total assets

$

5,549,050

$

5,033,910

$

6,562,951

$

(10,571,782

)

$

6,574,129

Liabilities, Noncontrolling Interests, and Equity

Secured notes payable

$

$

$

724,305

$

$

724,305

Unsecured senior notes payable

Unsecured senior line of credit

370,000

370,000

Unsecured senior bank term loans

1,600,000

1,600,000

Unsecured senior convertible notes

84,959

84,959

Accounts payable, accrued expenses, and tenant security deposits

83,488

241,905

325,393

Dividends payable

36,302

277

36,579

Intercompany note payable

2,195

(2,195

)

Total liabilities

2,174,749

968,682

(2,195

)

3,141,236

Redeemable noncontrolling interests

16,034

16,034

Alexandria Real Estate Equities, Inc.’s stockholders’ equity

3,374,301

5,033,910

5,535,677

(10,569,587

)

3,374,301

Noncontrolling interests

42,558

42,558

Total equity

3,374,301

5,033,910

5,578,235

(10,569,587

)

3,416,859

Total liabilities, noncontrolling interests, and equity

$

5,549,050

$

5,033,910

$

6,562,951

$

(10,571,782

)

$

6,574,129

31



Table of Contents

Condensed Consolidating Statement of Income

for the Three Months Ended March 31, 2012
(In thousands)

(Unaudited)

Alexandria
Real Estate
Equities, Inc.
(Issuer)

Alexandria
Real Estate
Equities, L.P.
(Guarantor
Subsidiary)

Combined
Non-
Guarantor
Subsidiaries

Eliminations

Consolidated

Revenues

Rental

$

1,721

$

$

106,064

$

$

107,785

Tenant recoveries

757

33,795

34,552

Other income

1,998

585

3,421

(3,375

)

2,629

Total revenues

4,476

585

143,280

(3,375

)

144,966

Expenses

Rental operations

2,596

40,814

43,410

General and administrative

9,499

4,237

(3,375

)

10,361

Interest

10,569

5,658

16,227

Depreciation and amortization

1,393

42,012

43,405

Total expenses

24,057

92,721

(3,375

)

113,403

(Loss) income from continuing operations before equity in earnings of affiliates and loss on early extinguishment of debt

(19,581

)

585

50,559

31,563

Equity in earnings of affiliates

52,268

49,356

985

(102,609

)

Loss on early extinguishment of debt

(623

)

(623

)

Income from continuing operations

32,064

49,941

51,544

(102,609

)

30,940

Loss from discontinued operations, net

(29

)

(29

)

Gain on sale of land parcel

1,864

1,864

Net income

32,064

49,941

53,379

(102,609

)

32,775

Net income attributable to noncontrolling interests

711

711

Dividends on preferred stock

7,483

7,483

Preferred stock redemption charge

5,978

5,978

Net income attributable to unvested restricted stock awards

235

235

Net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

18,368

$

49,941

$

52,668

$

(102,609

)

$

18,368

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Table of Contents

Condensed Consolidating Statement of Income

for the Three Months Ended March 31, 2011
(In thousands)

(Unaudited)

Alexandria
Real Estate
Equities, Inc.
(Issuer)

Alexandria
Real Estate
Equities, L.P.
(Guarantor
Subsidiary)

Combined
Non-
Guarantor
Subsidiaries

Eliminations

Consolidated

Revenues

Rental

$

1,725

$

$

104,528

$

$

106,253

Tenant recoveries

762

32,128

32,890

Other income (loss)

2,220

(269

)

2,011

(3,185

)

777

Total revenues

4,707

(269

)

138,667

(3,185

)

139,920

Expenses

Rental operations

2,095

39,189

(223

)

41,061

General and administrative

8,714

3,745

(2,962

)

9,497

Interest

11,525

6,285

17,810

Depreciation and amortization

1,211

35,371

36,582

Total expenses

23,545

84,590

(3,185

)

104,950

(Loss) income from continuing operations before equity in earnings of affiliates and loss on early extinguishment of debt

(18,838

)

(269

)

54,077

34,970

Equity in earnings of affiliates

53,029

50,561

995

(104,585

)

Loss on early extinguishment of debt

(2,495

)

(2,495

)

Income from continuing operations

31,696

50,292

55,072

(104,585

)

32,475

Income from discontinued operations, net

150

150

Net income

31,696

50,292

55,222

(104,585

)

32,625

Net income attributable to noncontrolling interests

929

929

Dividends on preferred stock

7,089

7,089

Net income attributable to unvested restricted stock awards

242

242

Net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

24,365

$

50,292

$

54,293

$

(104,585

)

$

24,365

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Table of Contents

Condensed Consolidating Statement of Comprehensive Income

for the Three Months Ended March 31, 2012
(In thousands)

(Unaudited)

Alexandria
Real Estate
Equities, Inc.
(Issuer)

Alexandria
Real Estate
Equities, L.P.
(Guarantor
Subsidiary)

Combined
Non-
Guarantor
Subsidiaries

Eliminations

Consolidated

Net income

$

32,064

$

49,941

$

53,379

$

(102,609

)

$

32,775

Other comprehensive income:

Unrealized gain (loss) on marketable securities

Unrealized holding gains arising during the period

31

643

674

Reclassification adjustment for gains included in net income

(11

)

(913

)

(924

)

Unrealized gain (loss) on marketable securities, net

20

(270

)

(250

)

Unrealized gain on interest rate swaps

Unrealized interest rate swap losses arising during the period

(4,073

)

(4,073

)

Reclassification adjustment for amortization of interest expense included in net income

5,775

5,775

Unrealized gain on interest rate swaps, net

1,702

1,702

Foreign currency translation gain

9,959

9,959

Total other comprehensive income

1,702

20

9,689

11,411

Comprehensive income

33,766

49,961

63,068

(102,609

)

44,186

Comprehensive income attributable to noncontrolling interests

(699

)

(699

)

Comprehensive income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

33,766

$

49,961

$

62,369

$

(102,609

)

$

43,487

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Table of Contents

Condensed Consolidating Statement of Comprehensive Income

for the Three Months Ended March 31, 2011
(In thousands)

(Unaudited)

Alexandria
Real Estate
Equities, Inc.
(Issuer)

Alexandria
Real Estate
Equities, L.P.
(Guarantor
Subsidiary)

Combined
Non-
Guarantor
Subsidiaries

Eliminations

Consolidated

Net income

$

31,696

$

50,292

$

55,222

$

(104,585

)

$

32,625

Other comprehensive income:

Unrealized (loss) gain on marketable securities

Unrealized holding (losses) gains arising during the period

(55

)

568

513

Reclassification adjustments for gains included in net income

Unrealized (loss) gain on marketable securities, net

(55

)

568

513

Unrealized gain on interest rate swaps

Unrealized interest rate swap gains arising during the period

300

300

Reclassification adjustment for amortization of interest expense included in net income

5,439

5,439

Unrealized gain on interest rate swaps, net

5,739

5,739

Foreign currency translation gain

4,883

4,883

Total other comprehensive income (loss)

5,739

(55

)

5,451

11,135

Comprehensive income

37,435

50,237

60,673

(104,585

)

43,760

Comprehensive income attributable to noncontrolling interests

(922

)

(922

)

Comprehensive income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

37,435

$

50,237

$

59,751

$

(104,585

)

$

42,838

35



Table of Contents

Condensed Consolidating Statement Cash Flows

for the Three Months Ended March 31, 2012
(In thousands)

(Unaudited)

Alexandria Real
Estate Equities,
Inc. (Issuer)

Alexandria Real
Estate Equities,
L.P. (Guarantor
Subsidiary)

Combined
Non-Guarantor
Subsidiaries

Eliminations

Consolidated

Operating Activities

Net income

$

32,064

$

49,941

$

53,379

$

(102,609

)

$

32,775

Adjustments to reconcile net income to net cash provided by operating activities:

Depreciation and amortization

1,393

42,012

43,405

Loss on early extinguishment of debt

623

623

Gain on sale of land parcel

(1,864

)

(1,864

)

Amortization of loan fees and costs

1,792

851

2,643

Amortization of debt premiums/discounts

81

98

179

Amortization of acquired above and below market leases

(800

)

(800

)

Deferred rent

17

(8,813

)

(8,796

)

Stock compensation expense

3,293

3,293

Equity in loss related to investments

26

26

Equity in income related to subsidiaries

(52,268

)

(49,356

)

(985

)

102,609

Gain on sales of investments

(611

)

(1,388

)

(1,999

)

Loss on sales of investments

1

1

Changes in operating assets and liabilities:

Restricted cash

(3

)

865

862

Tenant receivables

(9

)

(1,228

)

(1,237

)

Deferred leasing costs

4,266

(11,277

)

(7,011

)

Other assets

22

(2,433

)

(2,411

)

Accounts payable, accrued expenses, and tenant security deposits

(23,545

)

13,541

(10,004

)

Net cash (used in) provided by operating activities

(32,274

)

81,959

49,685

Investing Activities

Additions to properties

(304

))

(120,281

)

(120,585

)

Purchase of properties

(19,946

)

(19,946

)

Change in restricted cash related to construction projects

(1,400

)

(1,400

)

Distribution from unconsolidated real estate entity

22,250

22,250

Contributions to unconsolidated real estate entity

(3,914

)

(3,914

)

Investments in subsidiaries

(50,379

)

(40,116

)

(1,144

)

91,639

Additions to investments

(119

)

(5,319

)

(5,438

)

Proceeds from investments

1,149

3,636

4,785

Net cash used in investing activities

(50,683

)

(39,086

)

(126,118

)

91,639

(124,248

)

Financing Activities

Proceeds from issuance of unsecured senior notes payable

544,649

544,649

Proceeds from issuance of preferred stock

124,868

124,868

Principal reductions of secured notes payable

(2,688

)

(2,688

)

Principal borrowings from unsecured senior line of credit

248,000

248,000

Repayments of borrowings from unsecured senior line of credit

(451,000

)

(451,000

)

Repayment of unsecured senior term loan

(250,000

)

(250,000

)

Repurchase of unsecured senior convertible notes

(83,801

)

(83,801

)

Change in restricted cash related to financings

(15,955

)

(15,955

)

Transfers due to/from parent company

40,560

51,079

(91,639

)

Deferred financing costs paid

(5,184

)

(116

)

(5,300

)

Proceeds from exercise of stock options

112

112

Dividends paid on common stock

(30,386

)

(30,386

)

Dividends paid on preferred stock

(7,089

)

(7,089

)

Distributions to redeemable noncontrolling interests

(315

)

(315

)

Contributions by noncontrolling interests

625

625

Distributions to noncontrolling interests

(369

)

(369

)

Net cash provided by financing activities

90,169

40,560

32,261

(91,639

)

71,351

Effect of exchange rate changes on cash and cash equivalents

2,034

2,034

Net increase (decrease) in cash and cash equivalents

7,212

1,474

(9,864

)

(1,178

)

Cash and cash equivalents at beginning of period

10,608

67,931

78,539

Cash and cash equivalents at end of period

$

17,820

$

1,474

$

58,067

$

$

77,361

36



Table of Contents

Condensed Consolidating Statement Cash Flows

for the Three Months Ended March 31, 2011
(In thousands)

(Unaudited)

Alexandria Real
Estate Equities,
Inc. (Issuer)

Alexandria Real
Estate Equities,
L.P. (Guarantor
Subsidiary)

Combined
Non-Guarantor
Subsidiaries

Eliminations

Consolidated

Operating Activities

Net income

$

31,696

$

50,292

$

55,222

$

(104,585

)

$

32,625

Adjustments to reconcile net income to net cash provided by operating activities:

Depreciation and amortization

1,211

35,496

36,707

Loss on early extinguishment of debt

2,495

2,495

Amortization of loan fees and costs

1,729

549

2,278

Amortization of debt premiums/discounts

1,268

67

1,335

Amortization of acquired above and below market leases

(4,854

)

(4,854

)

Deferred rent

96

(6,803

)

(6,707

)

Stock compensation expense

2,356

2,356

Equity in income related to subsidiaries

(53,029

)

(50,561

)

(995

)

104,585

Gain on sales of investments

(13

)

(1,641

)

(1,654

)

Loss on sales of investments

283

1,108

1,391

Changes in operating assets and liabilities:

Restricted cash

(5

)

42

37

Tenant receivables

(11

)

(1,485

)

(1,496

)

Deferred leasing costs

(363

)

(13,998

)

(14,361

)

Other assets

835

452

1,287

Intercompany receivable/payable

(3,158

)

3,158

Accounts payable, accrued expenses, and tenant security deposits

(16,525

)

9,554

(6,971

)

Net cash (used in) provided by operating activities

(31,405

)

1

75,872

44,468

Investing Activities

Additions to properties

(1,340

)

(72,947

)

(74,287

)

Purchase of properties

(7,458

)

(7,458

)

Change in restricted cash related to construction projects

259

259

Contributions to unconsolidated real estate entity

(757

)

(757

)

Investments in subsidiaries

(13,536

)

(11,922

)

(392

)

25,850

Additions to investments

(1,196

)

(5,318

)

(6,514

)

Proceeds from investments

217

2,278

2,495

Net cash used in investing activities

(14,876

)

(12,901

)

(84,335

)

25,850

(86,262

)

Financing Activities

Principal reductions of secured notes payable

(2,991

)

(2,991

)

Principal borrowings from unsecured senior line of credit and unsecured term loans

460,000

460,000

Repayments of borrowings from unsecured senior line of credit

(279,000

)

(279,000

)

Repayment of unsecured senior term loan

Repurchase of unsecured senior convertible notes

(98,590

)

(98,590

)

Change in restricted cash related to financings

(2,188

)

(2,188

)

Transfers due to/from parent company

12,302

13,548

(25,850

)

Deferred financing costs paid

(15,127

)

(123

)

(15,250

)

Proceeds from exercise of stock options

796

796

Dividends paid on common stock

(24,923

)

(24,923

)

Dividends paid on preferred stock

(7,089

)

(7,089

)

Distributions to redeemable noncontrolling interests

(315

)

(315

)

Distributions to noncontrolling interests

(750

)

(750

)

Net cash provided by financing activities

36,067

12,302

7,181

(25,850

)

29,700

Effect of exchange rate changes on cash and cash equivalents

(942

)

(942

)

Net decrease in cash and cash equivalents

(10,214

)

(598

)

(2,224

)

(13,036

)

Cash and cash equivalents at beginning of period

48,623

602

42,007

91,232

Cash and cash equivalents at end of period

$

38,409

$

4

$

39,783

$

$

78,196

37



Table of Contents

14.  Subsequent events

On April 13, 2012, we redeemed all 5,185,500 shares of our outstanding Series C Preferred Stock at a redemption price of $25.00 per share plus $0.5234375 per share, representing accumulated and unpaid dividends to the redemption date.  See Note 10 for further information.

In April 2012, we amended our $1.5 billion unsecured senior line of credit, with Merrill Lynch, Pierce, Fenner & Smith Incorporated, J.P. Morgan Securities Inc., and Citigroup Global Markets Inc. as joint lead arrangers; Bank of America, N.A., as Administrative Agent; and certain lenders, to extend the maturity date of our unsecured senior line of credit, provide an accordion option for up to an additional $500 million, and reduce the interest rate for outstanding borrowings. The maturity date of the unsecured senior line of credit was extended to April 2017, assuming provided that we exercise our sole right to extend this maturity date twice by an additional six months after each exercise. Borrowing under the unsecured senior line of credit will bear interest at LIBOR or the base rate specified in the amended credit agreement, plus in either case a specified margin. The Applicable Margin for LIBOR borrowings under the unsecured senior line of credit was set at 1.20%, down from 2.40% in effect immediately prior to the modification. In addition to the Applicable Margin, our unsecured senior line of credit is subject to an annual facility fee of 0.25%.  In connection with the modification of our unsecured senior line of credit in April 2012, we recognized a loss on early extinguishment of debt of approximately $1.6 million related to the write-off of a portion of unamortized loan fees.

In April 2012, we amended our 2016 Unsecured Senior Bank Term Loan and 2017 Unsecured Senior Bank Term Loan, conforming the financial covenants contained in our unsecured senior bank term loan agreements to those contained in our amended $1.5 billion unsecured senior line of credit.

38



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Item 2. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

Certain information and statements included in this quarterly report on Form 10-Q, including, without limitation, statements containing the words “believes,” “expects,” “may,” “will,” “should,” “seeks,” “approximately,” “intends,” “plans,” “estimates,” or “anticipates,” or the negative of these words or similar words, constitute “forward-looking statements” within the meaning of Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended.  Forward-looking statements involve inherent risks and uncertainties regarding events, conditions, and financial trends that may affect our future plans of operations, business strategy, results of operations, and financial position.  A number of important factors could cause actual results to differ materially from those included within or contemplated by the forward-looking statements, including, but not limited to the following:

· negative worldwide economic, financial, and banking conditions;

· worldwide economic recession, lack of confidence, and/or high structural unemployment;

· potential defaults on national debt by certain countries;

· potential and further downgrades of the credit ratings of the federal, state, and foreign governments, or their perceived creditworthiness;

· concerns regarding the European debt crisis and market perception concerning the instability of the euro;

· failure of the United States government to agree on a debt ceiling or deficit reduction plan;

· potential and further downgrades of the credit ratings of major financial institutions, or their perceived creditworthiness;

· financial, banking, and credit market conditions;

· the seizure or illiquidity of credit markets;

· failure to meet market expectations for our financial performance;

· our inability to obtain capital (debt, construction financing, and/or equity) or refinance debt maturities;

· our inability to comply with financial covenants in our debt agreements;

· inflation or deflation;

· prolonged period of stagnant growth;

· increased interest rates and operating costs;

· adverse economic or real estate developments in our markets;

· our failure to successfully complete and lease our existing space held for redevelopment and new properties acquired for that purpose and any properties undergoing development;

· significant decreases in our active development, active redevelopment, or preconstruction activities resulting in significant increases in our interest, operating, and payroll expenses;

· our failure to successfully operate or lease acquired properties;

· the financial condition of our insurance carriers;

· general and local economic conditions;

· government changes to the healthcare system and its negative impact on our tenants;

· adverse developments concerning the life science industry and/or our life science client tenants;

· the nature and extent of future competition;

· lower rental rates, and/or higher vacancy rates;

· failure to renew or replace expiring leases;

· defaults on or non-renewal of leases by tenants;

· availability of and our ability to attract and retain qualified personnel;

· our failure to comply with laws or changes in law;

· compliance with environmental laws;

· our failure to maintain our status as a real estate investment trust (“REIT”);

· changes in laws, regulations, and financial accounting standards;

· certain ownership interests outside the United States that may subject us to different or greater risks than those associated with our domestic operations; and

· fluctuations in foreign currency exchange rates.

This list of risks and uncertainties is not exhaustive.  Additional information regarding risk factors that may affect us is included under the headings “Risk Factors” and “Management’s Discussion and Analysis of Financial Condition and Results of Operations” in our annual report on Form 10-K for the fiscal year ended December 31, 2011.  Readers of this quarterly report on Form 10-Q should also read our Securities and Exchange Commission (“SEC”) and other publicly filed documents for further discussion regarding such factors.

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As used in this quarterly report on Form 10-Q, references to the “Company”, “we”, “our”, and “us” refer to Alexandria Real Estate Equities, Inc. and its subsidiaries. The following discussion should be read in conjunction with the condensed consolidated financial statements and the accompanying notes appearing elsewhere in this quarterly report on Form 10-Q.  References to “GAAP” used herein refer to United States generally accepted accounting principles.

Overview

We are a Maryland corporation formed in October 1994 that has elected to be taxed as a REIT for federal income tax purposes.  We are the largest owner, preeminent REIT, and leading life science real estate company, focused principally on science-driven cluster development through the ownership, operation, management, selective acquisition, development, and redevelopment of properties containing life science laboratory space.  We are the leading provider of high-quality environmentally sustainable real estate, technical infrastructure, and services to the broad and diverse life science industry.  Client tenants include institutional (universities and independent non-profit institutions), pharmaceutical, biotechnology, product and service entities, clean technology, medical device, and government agencies.  Our primary business objective is to maximize stockholder value by providing our stockholders with the greatest possible total return based on a multifaceted platform of internal and external growth. Our operating platform is based on the principle of “clustering,” with assets and operations located adjacent to life science entities, driving growth and technological advances within each cluster.

As of March 31, 2012, we had 174 properties aggregating approximately 15.5 million rentable square feet, composed of approximately 13.6 million rentable square feet of operating properties, approximately 986,828 rentable square feet undergoing active development, and approximately 910,139 rentable square feet undergoing active redevelopment.  Our operating properties were approximately 94.2% leased as of March 31, 2012.  Our primary sources of revenues are rental income and tenant recoveries from leases of our properties.  The comparability of financial data from period to period is affected by the timing of our property acquisition, development, and redevelopment activities.

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2012 highlights

Significant Balance Sheet Management Milestones

· Completed debut offering of 4.60% unsecured senior notes with aggregate net proceeds of $544.6 million; net proceeds from offering were used to repay certain outstanding variable rate bank debt;

· Completed 6.45% series E perpetual preferred stock offering with aggregate net proceeds of $124.9 million; net proceeds from offering were used to redeem $129.6 million of outstanding 8.375% series C perpetual preferred stock in April 2012;

· Lowered interest rate and extended maturity date to April 2017 pursuant to amendment to $1.5 billion unsecured senior line of credit in April 2012;

· Assets under contract for sale and completed asset sales aggregating total sale price of $47.4 million, or 42%, of $112 million sales target for 2012; and

· Reduced unhedged variable rate debt to 5% of total debt.

Core Operating Metrics

· Total revenues for the three months ended march 31, 2012, were $145.0 million, as compared to total revenues for the three months ended December 31, 2011, of $145.8 million, and total revenues for the three months ended March 31, 2011, of $139.9 million.

· Net operating income (“NOI”) for the three months ended March 31, 2012, was $101.6 million, compared to NOI for the three months ended December 31, 2011, of $101.8 million, and NOI for the three months ended March 31, 2011, of $98.9 million.

· Operating margins were solid at 70%.

· Solid life science space demand in key cluster markets; executed 63 leases for 912,000 rentable square feet, including 394,000 rentable square feet of development and redevelopment space

Fourth highest quarter of leasing activity in company history

Rental rate increase of 3.3% and decrease of 2.8% on a GAAP and cash basis, respectively, on renewed/re-leased space; excluding one lease for 18,000 rentable square feet related to one tenant in the Sorrento Valley submarket in San Diego, rental rates for renewed/re-leased space were on average 7.6% and 1.1% higher than rental rates for expiring leases on a GAAP and cash basis, respectively

Key life science space leasing

Dana-Farber Cancer Institute, Inc. leased 154,000 rentable square feet of a multi-tenant development in the Greater Boston market

Onyx Pharmaceuticals, Inc. leased 171,000 rentable square feet build-to-suit development in the San Francisco Bay market

Hamner Institute leased 100,000 rentable square feet building in the Research Triangle Park market

Illumina, Inc. leased 23,000 rentable square feet development expansion in the San Diego market

· 46% of annualized base rent from investment grade tenants;

· Cash and GAAP same property revenues less operating expenses increase of 1.7% and decrease of 0.7%, respectively; and

· Occupancy percentage for operating properties of 94.2% and occupancy percentage for operating and redevelopment properties of 87.9%.

Value-Added Opportunities and External Growth

· 100% leased on five of seven ground-up development projects aggregating 987,000 rentable square feet, including commencement of 100% pre-leased 171,000 rentable square feet single tenant ground-up development project in the San Francisco Bay market

· 63% leased/negotiating on 11 redevelopment projects aggregating 910,000 rentable square feet

Significant Announcements

· In April 2012, our board of directors elected Maria C. Freire, Ph.D., as a director of the Company

· On May 28, 2012, the Company will celebrate its 15 th anniversary as an NYSE listed Company

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Significant balance sheet milestones

Transaction

Significant Balance Sheet Management Milestones (in thousands)

Date

Amount (1)

Debut 4.60% investment grade unsecured senior notes payable offering

February 2012

$

544,649

Repurchase of 3.70% Unsecured Senior Convertible Notes

January 2012

$

(83,801

)

Repayment of 2012 Unsecured Senior Bank Term Loan

February 2012

$

(250,000

)

Amendment of $1.5 billion unsecured senior line of credit (2)

April 2012

$

1,500,000

Issuance of 6.45% Series E Preferred Stock

March 2012

$

124,868

Notice of redemption of 8.375% Series C Preferred Stock (3)

March 2012

$

(129,638

)

Sale of interest in land parcel to joint venture partner

March 2012

$

31,360

(1) Net of discounts and offering costs, as applicable.

(2) Outstanding balance of unsecured senior line of credit as of March 31, 2012 was approximately $167 million.

(3) Redemption of 8.375% Series C Preferred Stock occurred on April 13, 2012.

4.60% investment grade unsecured senior notes payable offering

During the three months ended March 31, 2012, we completed the issuance of our 4.60% unsecured senior notes payable due in February 2022.  N et proceeds of approximately $544.6 million were used to repay outstanding variable rate bank debt, including $250 million of our unsecured senior bank term loan (“2012 Unsecured Senior Bank Term Loan”), and approximately $294.6 million of outstanding borrowings under our unsecured senior line of credit.

Debt repayments

During the three months ended March 31, 2012, we retired substantially all of our 3.70% unsecured senior convertible notes (“3.70% Unsecured Senior Convertible Notes”) and the entire outstanding balance on our 2012 Unsecured Senior Bank Term Loan.  In conjunction with the retirement of our 2012 Unsecured Senior Bank Term Loan, we recognized a loss on early extinguishment of debt of approximately $0.6 million related to the write-off of unamortized loan fees.

Amendment of $1.5 billion unsecured line of credit

In April 2012, we amended our $1.5 billion unsecured senior line of credit, with Merrill Lynch, Pierce, Fenner & Smith Incorporated, J.P. Morgan Securities Inc., and Citigroup Global Markets Inc. as joint lead arrangers; Bank of America, N.A., as Administrative Agent; and certain lenders, to extend the maturity date of our unsecured senior line of credit, provide an accordion option for up to an additional $500 million, and reduce the interest rate for outstanding borrowings. The maturity date of the unsecured senior line of credit was extended to April 2017, assuming provided that we exercise our sole right to extend this maturity date twice by an additional six months after each exercise. Borrowing under the unsecured senior line of credit will bear interest at LIBOR or the base rate specified in the amended credit agreement, plus in either case a specified margin. The Applicable Margin for LIBOR borrowings under the unsecured senior line of credit was set at 1.20%, down from 2.40% in effect immediately prior to the modification. In addition to the Applicable Margin, our unsecured senior line of credit is subject to an annual facility fee of 0.25%.  In connection with the modification of our unsecured senior line of credit in April 2012, we recognized a loss on early extinguishment of debt of approximately $1.6 million related to the write-off of a portion of unamortized loan fees.

6.45% series E preferred stock offering

In March 2012, we completed a public offering of 5,200,000 shares of our 6.45% series E cumulative redeemable Preferred Stock (“Series E Preferred Stock”).  The shares were issued at a price of $25.00 per share, resulting in net proceeds of approximately $124.9 million (after deducting underwriters’ discounts and other offering costs).  The proceeds were initially used to reduce the outstanding borrowings under our unsecured senior line of credit. We then borrowed funds under our unsecured senior line of credit to redeem our 8.375% series C cumulative redeemable preferred stock in April 2012 (“Series C Preferred Stock”).  The dividends on our Series E Preferred Stock are cumulative and accrue from the date of original issuance.  We pay dividends quarterly in arrears at an annual rate of 6.45%, or $1.6125 per share.  Our Series E Preferred Stock has no stated maturity date, is not subject to any sinking fund or mandatory redemption provisions, and is not redeemable before March 15, 2017, except to preserve our status as a REIT.  On and after March 15, 2017, we may, at our option, redeem the Series E Preferred Stock, in whole or in part, at any time for cash at a redemption price of $25.00 per share, plus any accrued and unpaid dividends on the Series E Preferred Stock up to, but excluding, the redemption date.  In addition, upon the occurrence of a change of control, we may, at our option, redeem the Series E Preferred Stock, in whole or in part, within 120 days after the first date on which such change of control occurred, by paying $25.00 per share, plus any accrued and unpaid dividends up to, but excluding, the date of redemption.  Investors in our Series E Preferred Stock generally have no voting rights.

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8.375% series C preferred stock redemption

In March 2012, we called for redemption all 5,185,500 outstanding shares of our 8.375% Series C Preferred Stock at a redemption price equal to $25.00 per share on the redemption date of April 13, 2012.  Separately, we announced in March 2012, that we would pay a dividend on the Series C Preferred Stock for the holders of record as of March 30, 2012.  The preferred stock redemption liability included in the accompanying condensed consolidated balance sheet as of March 31, 2012, reflects the Series C Preferred Stock at its redemption amount of $129.6 million, excluding the portion relating to the accumulated and unpaid dividends.  As a result of calling our Series C Preferred Stock for redemption in March 2012, we recognized a preferred stock redemption charge of approximately $6.0 million for costs related to the issuance and redemption of our Series C Preferred Stock.  This amount represents the excess of the fair value of the consideration transferred to the holders over the carrying amount of the preferred stock.  The accumulated and unpaid dividends relating to the Series C Preferred Stock as of March 31, 2012, have been included in dividends payable in the accompanying condensed consolidated balance sheet.  The Series C Preferred Stock was redeemed on April 13, 2012.

Real estate asset sales

Disposition

Real Estate Asset Sales – Actual/Projected (in thousands)

Amount

Sale of land parcel in March 2012

$

31,360

Assets held for sale at contract price

16,000

(1)

Projected additional dispositions

64,640

Total projected 2012 dispositions

$

112,000

(1) Amounts represent aggregate contract sales price. Net assets of these properties were approximately $14.5 million as of March 31, 2012.

Sale of land parcel

In March 2012, we contributed our 55% ownership interest in a land parcel aggregating 414,000 developable square feet in the Longwood Medical Area into a newly formed joint venture (the “Restated JV”) with National Development and Charles River Realty Investors, and admitted as a 50% member, Clarion Partners, LLC, resulting in a reduction of our ownership interest from 55% to 27.5%.  The transfer of 27.5% of our 55% ownership interest to Clarion Partners, LLC, in this real estate venture is accounted for as an in substance partial sale of an interest in the underlying real estate.  In connection with the sale of 27.5% of our 55% ownership interest in the land parcel, we received a special distribution of approximately $22.3 million which included the recognition of a $1.9 million gain on sale of land and approximately $5.4 million from our share of loan refinancing proceeds.  The land parcel we sold during the three months ended March 31, 2012, did not meet the criteria for discontinued operations since the parcel did not have any significant operations prior to disposition. Pursuant to the presentation and disclosure literature on gains/losses on sales or disposals by REITs required by the SEC, gains or losses on sales or disposals by a REIT that do not qualify as discontinued operations are classified below income from discontinued operations in the income statement. Accordingly for the three months ended March 31, 2012, we classified the $1.9 million gain on sale of land below income from discontinued operations, net, in the condensed consolidated statements of income.  Our 27.5% share of the land was sold at approximately $31 million (including closing costs), or approximately $275 per developable square foot.  Upon formation of the Restated JV, the existing $38.4 million non-recourse secured loan was refinanced with a seven-year (including two one-year extension options) non-recourse $213 million construction loan with initial loan proceeds of $50 million.  We do not expect capital contributions through the completion of the project to exceed the approximate $22.3 million in net proceeds received in this transaction. Construction of this $350 million project is expected to commence early in the second quarter of 2012 and the project is 37% pre-leased to Dana-Farber Cancer Institute, Inc.  In addition, we expect to earn development and other fees of approximately $3.5 million through 2015, and recurring annual property management fees thereafter.

Assets held for sale

As of March 31, 2012, we had three properties classified as “held for sale” at an aggregate contract price of $16 million with an aggregate net book value of approximately $14.5 million.

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Investment grade ratings and key credit metrics

In July 2011, we received investment grade ratings from two major rating agencies. Receipt of our investment grade ratings was a significant milestone for the Company that we believe will provide long-term value to our stockholders.  Key strengths of our balance sheet and business that highlight our investment grade credit profile include, among others, balance sheet liquidity, diverse and creditworthy tenant base, well-located properties proximate to leading research institutions, favorable lease terms, stable occupancy and cash flows, and demonstrated life science and real estate expertise.  This significant milestone broadens our access to another key source of debt capital and allows us to continue to pursue our long-term capital, investment, and operating strategies.  The issuance of investment grade unsecured senior notes payable has allowed us to begin the transition from bank debt financing to unsecured senior notes payable, from variable rate debt to fixed rate debt, and from short-term debt to long-term debt. While this transition of bank debt is in process, we will utilize interest rate swap agreements to reduce our interest rate risk. We expect to keep our unhedged variable rate debt at less than 20% of our total debt.

Three Months
Ended March 31,

Key Credit Metrics (1)

2012

2011

Net debt to Adjusted EBITDA

7.1x

7.0x

Net debt to gross assets (2)

36%

39%

Fixed charge coverage ratio

2.6x

2.7x

Interest coverage ratio

3.3x

3.4x

Unencumbered net operating income as a percentage of total net operating income

72%

65%

Liquidity – unsecured senior line of credit availability and unrestricted cash (2)

$1.4 billion

$0.9 billion

Non-income-producing assets as a percentage of gross real estate (2)

25%

26%

Unhedged variable rate debt as a percentage of total debt (2)

5%

46%

(1)

These metrics reflect certain non-GAAP financial measures. See “Non-GAAP Measures” for more information, including definitions and reconciliations to the most directly comparable GAAP measures.

(2)

At the end of the period.

Unsecured senior notes payable

In February 2012, we completed a public offering of our unsecured senior notes payable, and raised approximately $550 million in principal amount at a stated interest rate of 4.60%.  The unsecured senior notes payable were priced at 99.915% of the principal amount with a yield to maturity of 4.61% and are due on April 1, 2022.  The unsecured senior notes payable are unsecured obligations of the Company and are fully and unconditionally guaranteed by Alexandria Real Estate Equities, L.P., a wholly owned subsidiary of the Company.  The unsecured senior notes payable rank equally in right of payment with all other senior unsecured indebtedness. However, the unsecured senior notes payable are effectively subordinated to existing and future mortgages and other secured indebtedness (to the extent of the value of the collateral securing such indebtedness) and to all existing and future preferred equity and liabilities, whether secured or unsecured, of the Company’s subsidiaries, other than Alexandria Real Estate Equities, L.P.  We used the net proceeds of this offering to prepay the outstanding principal balance of $250 million on our 2012 Unsecured Senior Bank Term Loan and to reduce the outstanding balance on our unsecured senior line of credit.

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Acquisitions

In February 2012, we acquired 6 Davis Drive, a 100,000 rentable square foot life science laboratory building located in the Research Triangle Park market, for approximately $20 million.  The building is 100% leased to a non-profit research institute.  The property also includes opportunities to develop at least three additional build-to-suit or multi-tenant buildings aggregating at least an additional 450,000 rentable square feet in an excellent location.  We expect to achieve a stabilized yield on cost on a cash and GAAP basis for the operating property of approximately 8.4% and 8.9%, respectively.  Stabilized yield on cost is calculated as the quotient of net operating income and our investment in the property at stabilization (“Stabilized Yield”). These yields assume a purchase price allocation of $11.8 million to the 100,000 rentable square foot operating property and $8.3 million to the land for future additional buildings.

Acquisition

Operating

Occupancy

Purchase Price of

Stabilized Yield

Property/Market

Date

RSF

at Acquisition

Operating Property

Cash

GAAP

6 Davis Drive, Research Triangle Park

February 2012

100,000

100%

$

11,806

8.4%

8.9%

Development and redevelopment

In January 2012, we commenced a 100% pre-leased ground-up development of a 170,618 rentable square foot single tenant building at 259 East Grand Avenue in the San Francisco Bay market.  This project is 100% pre-leased to Onyx Pharmaceuticals Inc., and we expect to achieve a Stabilized Yield on both a cash and GAAP basis for this property in the range from 7.8% to 8.2%.  Funding for this property is expected to be provided by a construction loan and borrowings under our unsecured senior line of credit.  We expect to close the construction loan in the second quarter of 2012.

In March 2012, we executed a 154,000 rentable square foot lease with Dana-Farber Cancer Institute, Inc. for 37% of our 414,000 rentable square foot joint venture development project located in the Longwood Medical Area of the Greater Boston market.  Funding for this project is expected to be primarily provided by capital from our recently admitted joint venture partner and a non-recourse construction loan.  Additionally, our share of the funding is expected to be less than the $22.3 million distribution we received upon admittance of the new partner and refinancing of the project.  See Sale of Land Parcel on page 43 for additional information.

Leasing

For the three months ended March 31, 2012, we executed a total of 63 leases for approximately 912,000 rentable square feet at 45 different properties (excluding month-to-month leases).  Of this total, approximately 275,000 rentable square feet related to new or renewal leases of previously leased space (renewed/re-leased space), and approximately 637,000 rentable square feet related to developed, redeveloped, or previously vacant space.  Of the 637,000 rentable square feet, approximately 394,000 rentable square feet related to our development or redevelopment programs, and the remaining approximately 243,000 rentable square feet related to previously vacant space.  Rental rates for this renewed/re-leased space were on average approximately 2.8% lower on a cash basis and approximately 3.3% higher on GAAP basis than rental rates for the respective expiring leases.  Importantly, excluding one lease for 18,000 rentable square feet related to one tenant in the Sorrento Valley submarket in San Diego, rental rates for renewed/re-leased space were on average 7.6% and 1.1% higher than rental rates for expiring leases on a GAAP and cash basis, respectively.  Additionally, we granted tenant concessions, including free rent averaging approximately 1.5 months, with respect to the 912,000 rentable square feet leased during the three months ended March 31, 2012.  Approximately 68% of the number of leases executed during the three months ended March 31, 2012, had no tenant concessions.

As of March 31, 2012, approximately 95% of our leases (on a rentable square footage basis) were triple net leases, requiring tenants to pay substantially all real estate taxes, insurance, utilities, common area expenses, and other operating expenses (including increases thereto) in addition to base rent.  Additionally, approximately 92% of our leases (on a rentable square footage basis) provided for the recapture of certain capital expenditures, and approximately 94% of our leases (on a rentable square footage basis) contained effective annual rent escalations that were either fixed or indexed based on a consumer price index or another index.

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Value-added projects

A key component of our business model is our value-added development and redevelopment programs. These programs are focused on providing high-quality, generic, and reusable life science laboratory space to meet the real estate requirements of a wide range of clients in the life science industry.  Upon completion, each value-added project is expected to generate significant revenues and cash flows.  Our development and redevelopment projects are generally in locations that are highly desirable to life science entities, which we believe results in higher occupancy levels, longer lease terms, and higher rental income and returns.  Redevelopment projects generally consist of the permanent change in use of office, warehouse, and shell space into generic life science laboratory space, including the conversion of single-tenancy space to multi-tenancy space, or vice versa.  Development projects generally consist of the ground-up development of generic and reusable life science laboratory facilities.  We anticipate execution of new active development projects for aboveground vertical construction of new life science laboratory space generally only with significant pre-leasing.  Preconstruction activities include entitlements, permitting, design, site work, and other activities prior to commencement of vertical construction of aboveground shell and core improvements.  Our objective also includes the advancement of preconstruction efforts to reduce the time required to deliver projects to prospective tenants.  These critical activities add significant value for future ground-up development and are required for the vertical construction of buildings.  Ultimately, these projects will provide high-quality facilities for the life science industry and will generate significant revenue and cash flows for the Company.

Projects in India and China represent development opportunities focusing on life science laboratory space for our current client tenants and other life science relationship entities.  These projects focus on real estate investments with targeted returns on investment greater than returns expected in the United States.  We have approximately 459,000 square feet undergoing construction in India.  Additionally, we have a two-building development project located in North China aggregating 292,000 rentable square feet undergoing construction.  Our development, redevelopment, and preconstruction projects as well as certain real estate in Asia are classified as construction in progress.  We are required to capitalize interest and other direct project costs during the period an asset is undergoing activities to prepare it for its intended use.  Capitalization of interest and other direct project costs ceases after a project is substantially complete and ready for its intended use.  Additionally, should activities necessary to prepare an asset for its intended use cease, interest, taxes, insurance, and certain other direct project costs would be expensed as incurred. When construction activities cease and the asset is ready for its intended use, the asset is transferred out of construction in progress and classified as rental properties, net, or land held for future development.

Projected results

As of March 31, 2012, we had seven ground-up development projects in process aggregating approximately 986,828 rentable square feet. We also had eleven projects undergoing conversion into laboratory space through redevelopment aggregating approximately 910,139 rentable square feet.  These projects along with recently delivered projects, certain future projects, and contribution from same properties are expected to contribute significant increases in rental income, net operating income, and cash flows.  Net operating income is projected to increase significantly quarter to quarter to a range from $111 million to $113 million for the three months ended December 31, 2012.  Operating performance assumptions related to the completion of our development and redevelopment projects, including the timing of initial occupancy, stabilization dates, and stabilization yields are included on page 49.  Other key assumptions regarding our projection, including the impact of various development and redevelopment projects, are included in the tables below.

Projected interest expense, net, and related capitalized interest for the year ended December 31, 2012, is expected to decrease from our prior guidance reported on February 22, 2012, by approximately $2.0 million and $1.5 million, respectively, primarily due to the amendment of our $1.5 billion unsecured senior line of credit, which among other changes, reduced the Applicable Margin for LIBOR borrowings under the unsecured senior line of credit to 1.20%, down from 2.40% in effect immediately prior to the amendment.  Certain key assumptions regarding our projected sources and uses of capital are included on page 63.  We expect general and administrative expenses for the year ended December 31, 2012, to increase from 12% to 14% over the year ended December 31, 2011, compared to our prior guidance of up 5% to 8%.  The increase is primarily due to the timing of hiring additional employees related to the growth in both the depth and breadth of our operations in multiple markets, and other compensation-related expenses.  Since December 31, 2011, our number of employees has increased by approximately 6%.  As a percentage of total revenues, we expect general and administrative expenses for the year ended December 31, 2012, to be consistent with the year ended December 31, 2011, at approximately 7% to 8% of total revenues.

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The completion of our development and redevelopment projects will also result in increased interest expense and other direct project costs, because these project costs will no longer qualify for capitalization and these costs will be expensed as incurred.  Our projections for general and administrative expenses, capitalization of interest, and interest expense, net, are included in the tables below.  Our projections, including projection of net operating income, are subject to a number of variables and uncertainties, including those discussed under the forward looking statements section of Part I under the headings “Management’s Discussion and Analysis of Financial Condition and Results of Operations” and “Risk Factors,” of our annual report on Form 10-K for the year ended December 31, 2011.  To the extent our full year earnings guidance is updated during the year we will provide additional disclosure supporting reasons for any significant changes to such guidance.  Further, we believe net operating income is a key performance indicator and is useful to investors as a performance measure because, when compared across periods, net operating income reflects the impact on operations from trends in occupancy rates, rental rates, and operating costs, providing perspective not immediately apparent from income from continuing operations.

Key net operating income projection assumptions

Year Ended
December 31, 2012

Same property net operating income growth — cash basis

3% to 5%

Same property net operating income growth — GAAP basis

0% to 2%

Rental rate steps on lease renewals and re-leasing of space — cash basis

Slightly negative/positive

Rental rate steps on lease renewals and re-leasing of space — GAAP basis

Up to 5%

Straight-line rents

$6.5 million/qtr

Amortization of above and below market leases

$0.8 million/qtr

General and administrative expenses in comparison to prior year

Up 12% to 14%

Key expense and other projection assumptions

Capitalization of interest

$55.5 to $61.5 million

Interest expense, net

$73 to $79 million

Write-off of unamortized loan fees upon early retirement of the 2012 Unsecured Senior Bank Term Loan

$0.6 million

Write-off of loan fees upon modification of unsecured senior line of credit

$1.6 million

Preferred stock redemption charge

$6 million

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The following table summarizes our investments in real estate as of March 31, 2012 and December 31, 2011 (dollars in thousands, except per square foot amounts):

March 31, 2012

December 31, 2011

Book Value

Square Feet

Cost per
Square Foot

Book Value

Square Feet

Cost per
Square Foot

Land (related to rental properties)

$

506,136

$

510,630

Buildings and building improvements

4,473,337

4,417,093

Other improvements

185,653

185,036

Rental properties

5,165,126

13,641,270

$

379

5,112,759

13,567,997

$

377

Less: accumulated depreciation

(779,177

)

(742,535

)

Rental properties, net

4,385,949

4,370,224

Construction in progress (“CIP”)/current value-added projects:

Active development

231,164

986,828

234

198,644

818,020

243

Active redevelopment

297,031

910,139

326

281,555

919,857

306

Projects in India and China

114,207

751,000

152

106,775

817,000

131

Generic infrastructure/building improvement projects

124,716

92,338

767,118

2,647,967

290

679,312

2,554,877

266

Land/future value-added projects

Land held for future development

387,309

11,662,000

33

341,678

10,939,000

31

Land undergoing preconstruction activities (additional CIP) (1)

547,006

2,244,000

244

574,884

2,668,000

215

934,315

13,906,000

67

916,562

13,607,000

67

Investment in unconsolidated real estate entity

25,870

414,000

62

42,342

414,000

102

Real estate, net

6,113,252

30,609,237

$

200

6,008,440

30,143,874

$

199

Add: accumulated depreciation

779,177

742,535

Gross investment in real estate (2)

$

6,892,429

30,609,237

$

6,750,975

30,143,874

(1) We generally will not commence ground-up development of any parcels undergoing preconstruction activities without first securing significant pre-leasing for such space.  If vertical aboveground construction is not initiated at completion of preconstruction activities, the land parcel will be classified as land held for future development.  The two largest projects included in preconstruction consist of our 1.6 million developable square feet at Alexandria Center™ at Kendall Square in East Cambridge, Massachusetts, and our 407,000 developable square foot site for the second tower at Alexandria Center™ for Life Science – New York City.

(2) In addition to assets included in our gross investment in real estate, we hold options/rights for parcels supporting approximately 3.0 million developable square feet.  These parcels consist of: (a) a parcel supporting the future ground-up development of approximately 385,000 rentable square feet in Alexandria Center™ for Life Science – New York City related to an option under our ground lease; (b) a right to acquire land parcels supporting ground-up development of 636,000 rentable square feet in Edinburgh, Scotland; and (c) an option to increase our land use rights by up to approximately 2.0 million additional developable square feet in China.

48



Table of Contents

The following table provides detail on our development and redevelopment projects as of March 31, 2012 (dollars in thousands):

CIP

RSF

Investment

Stabilized

Project

Initial

Negotiating/

RSF

In

In

Cost to Complete

Total at

Yield

Start

Occupancy

Stabilization

Market/Property

Leased

Committed

In CIP

Service

Service

CIP

2012

Thereafter

Completion

Cash

GAAP

Date

Date

Date

Development projects

Greater Boston – Cambridge/Inner Suburbs

225 Binney Street

100%

–%

303,143

$

$

50,576

$

46,531

$

65,443

$

162,550

7.5%

8.1%

4Q11

4Q13

4Q13

San Francisco Bay – Mission Bay

409/499 Illinois Street

–%

–%

222,780

$

$

104,285

$

16,292

$

27,523

$

148,100

6.7%

7.4%

2Q11

2Q13

2Q14

San Francisco Bay – South SF

259 East Grand Ave.

100%

–%

170,618

$

$

20,693

$

37,488

$

22,680

$

80,861

7.8–8.2%

7.8–8.2%

1Q12

1Q13

3Q15

San Diego – University Town Center

4755 Nexus Center Drive

100%

–%

45,255

$

$

9,959

$

12,382

$

$

22,341

7.0%

7.7%

1Q11

3Q12

3Q12

5200 Illumina Way

100%

–%

127,373

$

$

27,162

$

19,803

$

2,335

$

49,300

7.0%

10.8%

4Q10

4Q12

4Q12

Canada

100%

–%

26,426

$

$

8,881

$

567

$

$

9,448

7.6%

8.2%

4Q11

2Q12

2Q12

Development Projects

75%

–%

895,595

$

$

221,556

$

133,063

$

117,981

$

472,600

Urban/central business district redevelopment projects

Greater Boston – Cambridge/Inner Suburbs

400 Technology Square

39%

–%

212,123

$

$

80,435

$

37,035

$

22,080

$

139,550

8.1%

9.1%

4Q11

4Q12

4Q13

San Diego – Torrey Pines

3530/3550 John Hopkins Court

100%

–%

98,320

$

$

38,456

$

11,944

$

$

50,400

8.6%

9.0%

2Q10

2Q12

3Q12

San Diego – University Town Center

10300 Campus Point Drive

91%

–%

189,562

89,576

$

40,387

$

25,113

$

53,897

$

12,203

$

131,600

7.6%

7.7%

4Q10

4Q11

3Q12

Seattle – Lake Union

1551 Eastlake Avenue

–%

23%

51,455

66,028

$

26,249

$

29,029

$

7,908

$

824

$

64,010

7.0%

7.4%

4Q11

4Q11

4Q13

Total urban/central business district redevelopment projects

64%

2%

551,460

155,604

$

66,636

$

173,033

$

110,784

$

35,107

$

385,560

San Francisco Bay – South SF

400/450 East Jamie Court

6%

31%

91,233

71,803

$

46,867

$

47,480

$

6,212

$

7,931

$

108,490

4.2%

4.3%

4Q06

3Q11

4Q13

Other – 400/450 East Jamie Court (1)

$

37,872

$

(37,872

)

Suburban and other redevelopment projects

11%

46%

358,679

31,624

$

17,589

$

147,405

$

46,458

$

22,993

$

234,445

2Q07–1Q12

1Q12–3Q13

2Q12–2Q14

Other – suburban and other redevelopment projects (1)

$

23,407

$

(23,407

)

Projects in India and China

751,000

$

$

114,207

$

37,809

TBD

$

152,016

Generic infrastructure/ building improvement projects

$

$

124,716

$

70,030

TBD

$

194,746

Subtotal

2,647,967

259,031

$

192,371

$

767,118

$

404,356

$

184,012

$

1,547,857

Preconstruction

2,244,000

$

$

547,006

$

36,814

TBD

$

583,820

Future projected construction projects

$

$

$

40,598

TBD

$

40,598

Total

4,891,967

259,031

$

192,371

$

1,314,124

$

481,768

$

184,012

$

2,172,275

(1) As of the period ended, some portion of the real estate basis associated with the rentable square feet under redevelopment or development was classified as in-service, because activities necessary to prepare the asset for its intended use were no longer in process.  In the near future, we anticipate recommencing activities necessary to prepare the asset for its intended use upon execution of leasing and final decisions related to design of each space.

49



Table of Contents

The following table summarizes the components of our future value-added square footage as of March 31, 2012:

Market

Land Undergoing
Preconstruction
Activities
(additional CIP)

Land Held for
Future Development

Total Land (1)

Investment in
Unconsolidated Real
Estate Entity (2)

Future
Redevelopment (3)

Greater Boston

1,582,000

225,000

1,807,000

414,000

119,000

San Francisco Bay – Mission Bay

290,000

290,000

San Francisco Bay – South San Francisco

1,024,000

1,024,000

40,000

San Diego

255,000

522,000

777,000

87,000

Greater NYC

407,000

407,000

Suburban Washington, D.C.

1,024,000

1,024,000

416,000

Seattle

1,124,000

1,124,000

80,000

Other non-cluster markets

1,125,000

1,125,000

237,000

International

6,328,000

6,328,000

Total

2,244,000

11,662,000

13,906,000

414,000

979,000

(1) In addition to assets included in our gross investment in real estate, we hold options/rights for parcels supporting approximately 3.0 million developable square feet.  These parcels consist of: (a) a parcel supporting the future ground-up development of approximately 385,000 rentable square feet in Alexandria Center™ for Life Science – New York City related to an option under our ground lease; (b) a right to acquire land parcels supporting ground-up development of 636,000 rentable square feet in Edinburgh, Scotland; and (c) an option to increase our land use rights by up to approximately 2.0 million additional developable square feet in China.

(2) Represents an unconsolidated development project in the Longwood Medical Area of the Greater Boston market, a newly formed joint venture with National Development, Charles River Realty Investors, and Clarion Partners, LLC.

(3) Our asset base also includes non-laboratory space (office, warehouse, and industrial space) identified for future conversion into life science laboratory space through redevelopment.  These spaces are classified in rental properties, net.

50



Table of Contents

Tenants

Our life science properties are leased principally to a diverse group of tenants, with no tenant accounting for more than 6.4% of our annualized base rent.  The chart below shows tenant business type by annualized base rent as of March 31, 2012:

GRAPHIC

The following table sets forth information regarding leases with our 20 largest client tenants based upon annualized base rent as of March 31, 2012 (dollars in thousands):

Remaining Lease

Approximate
Aggregate

Percentage
of
Aggregate

Percentage
of
Aggregate

Investment Grade Entities (3)

Number

Term in Years

Rentable

Total

Annualized

Annualized

Fitch

Moody’s

S&P

Education/

Tenant

of Leases

(1)

(2)

Square Feet

Square Feet

Base Rent

Base Rent

Rating

Rating

Rating

Research

1

Novartis AG

7

4.5

4.8

453,000

2.9

%

$

26,437

6.4

%

AA

Aa2

AA-

2

Eli Lilly and Company

5

9.3

11.0

262,182

1.7

15,146

3.7

A

A2

AA-

3

FibroGen, Inc.

1

11.6

11.6

234,249

1.5

14,300

3.5

4

Roche Holding Ltd

4

5.8

6.0

362,592

2.3

14,096

3.4

AA-

A1

AA-

5

Illumina, Inc.

1

19.6

19.6

346,581

2.2

13,260

3.2

6

United States Government

8

2.8

2.9

378,526

2.4

11,659

2.8

AAA

Aaa

AA+

7

Bristol-Myers Squibb Company

3

6.7

6.8

250,454

1.6

10,087

2.5

A+

A2

A+

8

GlaxoSmithKline plc

4

7.3

7.1

182,387

1.2

9,522

2.3

A+

A1

A+

9

Massachusetts Institute of Technology

3

2.8

2.5

178,952

1.1

8,154

2.0

Aaa

AAA

ü

10

The Regents of the University of California

3

9.4

9.4

182,242

1.2

7,435

1.8

AA+

Aa1

AA

ü

11

NYU-Neuroscience Translational Research Institute

2

13.7

12.9

78,597

0.5

6,993

1.7

Aa3

AA-

ü

12

Alnylam Pharmaceuticals, Inc. (4)

1

4.5

4.5

129,424

0.8

6,147

1.5

13

Gilead Sciences, Inc.

1

8.3

8.3

109,969

0.7

5,824

1.4

Baa1

A-

14

Amylin Pharmaceuticals, Inc.

3

4.1

4.3

168,308

1.1

5,753

1.4

15

Pfizer Inc.

2

7.2

7.0

116,518

0.7

5,502

1.3

A+

A1

AA

16

The Scripps Research Institute

2

4.7

4.6

99,377

0.6

5,197

1.3

AA-

Aa3

ü

17

Quest Diagnostics Incorporated

2

4.4

4.3

280,113

1.8

4,989

1.2

BBB+

Baa2

BBB+

18

Theravance, Inc. (5)

2

8.2

8.2

130,342

0.8

4,895

1.2

19

Infinity Pharmaceuticals, Inc.

2

2.8

2.8

67,167

0.4

4,382

1.1

20

Kadmon Corporation, LLC

2

8.7

8.5

46,958

0.3

4,184

1.0

Total/Weighted Average:

58

7.3

7.8

4,057,938

25.8

%

$

183,962

44.7

%

(1) Represents remaining lease term in years based on percentage of leased square feet.

(2) Represents remaining lease term in years based on percentage of annualized base rent in effect as of March 31, 2012.

(3) Ratings obtained from each of the following rating agencies: Fitch Ratings, Moody’s Investors Service, and Standard & Poor’s.

(4) As of December 31, 2011, Novartis AG owned approximately 13% of the outstanding stock of Alnylam Pharmaceuticals, Inc.

(5) As of April 2, 2012, GlaxoSmithKline plc owned approximately 18% of the outstanding stock of Theravance, Inc. The ownership percentage is expected to increase to 27% upon shareholder approval of GlaxoSmithKline plc’s pending stock purchase agreement.

51



Table of Contents

Location of properties

The locations of our properties are diversified among a number of life science cluster submarkets.  The following table sets forth, as of March 31, 2012, the total rentable square footage, and annualized base rent of our properties in each of our existing markets (dollars in thousands):

Rentable Square Feet

% of

Market

Operating

Develop-
ment

Redevelop-
ment

Total

% of Total

# of
Properties

Annualized
Base Rent (1)

Annualized
Base Rent

Greater Boston

3,124,941

303,143

329,438

3,757,522

24

%

39

$

111,991

28

%

San Francisco Bay

2,224,853

484,631

53,980

2,763,464

18

25

83,713

20

San Diego

2,080,547

172,628

374,083

2,627,258

17

35

66,580

16

Greater NYC

705,693

705,693

5

8

32,754

8

Suburban Washington, D.C.

2,439,656

101,183

2,540,839

16

32

53,526

13

Seattle

895,548

51,455

947,003

6

11

33,711

8

Research Triangle Park

941,639

941,639

6

14

19,454

5

Other non-cluster markets

61,002

61,002

2

599

Domestic markets

12,473,879

960,402

910,139

14,344,420

92

166

402,328

98

International

1,069,651

26,426

1,096,077

7

5

8,397

2

Subtotal

13,543,530

986,828

910,139

15,440,497

99

171

$

410,725

100

%

Discontinued operations

97,740

97,740

1

3

Total

13,641,270

986,828

910,139

15,538,237

100

%

174

(1) Annualized base rent means the annualized fixed base rental amount in effect as of March 31, 2012 (using rental revenue computed on a straight-line basis in accordance with GAAP).  Represents annualized base rent related to our operating rentable square feet.

Our average occupancy rate for operating properties as of December 31 of each year from 1998 to 2011, and March 31, 2012, was approximately 95.1%. Our average occupancy rate for operating and redevelopment properties as of December 31 of each year from 1998 to 2011, and March 31, 2012, was approximately 89.1%.

52



Table of Contents

Summary of Lease Expirations

The following table summarizes information with respect to the lease expirations at our properties as of March 31, 2012:

Percentage of

Annualized Base Rent of

Year of Lease Expiration

Number of Leases Expiring

RSF of Expiring Leases

Aggregate Total RSF

Expiring Leases (per RSF)

2012

57

(1)

868,255

(1)

6.4

%

$26.13

2013

89

1,311,036

9.6

29.52

2014

76

1,313,123

9.6

29.74

2015

61

1,225,565

9.0

32.35

2016

50

1,411,192

10.3

30.98

2017

44

1,322,956

9.7

30.44

2018

21

1,124,992

8.2

36.97

2019

13

528,045

3.9

35.43

2020

15

731,631

5.4

40.33

2021

18

611,863

4.5

38.44

Annualized Base

2012 RSF of Expiring Leases

Rent of

Negotiating/

Targeted for

Remaining

Expiring Leases

Market

Leased

Anticipating

Redevelopment

Expiring Leases

Total

(per RSF)

Market Rent (2)

Greater Boston

7,426

23,708

97,402

128,536

$

32.89

$30.00 - $55.00

San Francisco Bay

5,087

32,074

44,326

81,487

30.50

$30.00 - $42.00

San Diego

50,274

76,791

38,507

165,572

25.42

$24.00 - $36.00

Greater NYC

7,239

7,239

13.24

N/A

Suburban Washington, D.C.

69,679

13,776

105,000

97,554

286,009

23.55

$12.00 - $27.00

Seattle

2,468

46,216

66,146

39,110

153,940

27.82

$20.00 - $48.00

Research Triangle Park

16,795

28,677

45,472

14.33

$10.00 - $30.00

Other non-cluster markets

N/A

International

N/A

Total

129,847

105,582

280,011

352,815

868,255

(1)

$

26.13

Percentage of expiring leases

15%

12%

32%

41%

100%

Annualized Base

2013 RSF of Expiring Leases

Rent of

Negotiating/

Targeted for

Remaining

Expiring Leases

Market

Leased

Anticipating

Redevelopment

Expiring Leases

Total

(per RSF)

Market Rent (2)

Greater Boston

149,793

340,819

490,612

$

34.72

$30.00 - $55.00

San Francisco Bay

64,696

249,889

314,585

26.76

$30.00 - $42.00

San Diego

9,849

14,030

128,876

152,755

21.35

$24.00 - $36.00

Greater NYC

N/A

Suburban Washington, D.C.

61,451

197,115

258,566

30.40

$12.00 - $27.00

Seattle

15,373

15,373

28.18

$20.00 - $48.00

Research Triangle Park

12,810

35,522

48,332

22.52

$10.00 - $30.00

Other non-cluster markets

6,324

17,653

23,977

17.68

$14.00 - $22.00

International

6,836

6,836

26.78

$16.00 - $26.00

Total

9,849

295,074

14,030

992,083

1,311,036

$

29.52

Percentage of expiring leases

1%

23%

1%

75%

100%

(1) Excludes seven month-to-month leases for approximately 11,000 rentable square feet.

(2) Based upon rental rates achieved in recently executed leases.

53



Table of Contents

Results of operations

The following table presents information regarding our asset base and value-added projects as of March 31, 2012 and 2011:

March 31,

Rentable square feet

2012

2011

Operating properties

13,641,270

12,435,227

Development properties

986,828

479,751

Redevelopment properties

910,139

784,671

Total rentable square feet

15,538,237

13,699,649

Number of properties

174

168

Occupancy – operating

94.2%

94.2%

Occupancy – operating and redevelopment

87.9%

88.6%

Annualized base rent per leased rentable square foot

$

34.17

$

33.90

As a result of changes within our total property portfolio, the financial data presented in the table on the following page shows significant changes in revenue and expenses from period to period. In order to supplement an evaluation of our results of operations over a given period, we analyze the operating performance for all properties that were fully operating for the entire periods presented (herein referred to as “Same Properties”) separate from properties acquired subsequent to the first period presented, properties undergoing active development and active redevelopment, and corporate entities (legal entities performing general and administrative functions), which are excluded from same property results (herein referred to as “Non-Same Properties”). Additionally, rental revenues from lease termination fees, if any, are excluded from the results of the Same Properties.  For the three months ended March 31, 2012 and 2011, our Same Properties consisted of 141 operating properties aggregating approximately 10.6 million rentable square feet with occupancy of 93.9% and 94.0% at the end of each period, respectively.

Net operating income is a non-GAAP financial measure equal to income from continuing operations, the most directly comparable GAAP financial measure, plus loss from early extinguishment of debt, depreciation and amortization, interest expense, and general and administrative expense. We believe net operating income provides useful information to investors regarding our financial condition and results of operations because it reflects only those income and expense items that are incurred at the property level. Therefore, we believe net operating income is a useful measure for evaluating the operating performance of our real estate assets.

Further, we believe net operating income is useful to investors as a performance measure because when compared across periods, net operating income reflects the impact on operations from trends in occupancy rates, rental rates, and operating costs, providing perspective not immediately apparent from income from continuing operations.  Net operating income excludes certain components from income from continuing operations in order to provide results that are more closely related to the results of operations of our properties. For example, interest expense is not necessarily linked to the operating performance of a real estate asset and is often incurred at the corporate level rather than at the property level.  In addition, depreciation and amortization, because of historical cost accounting and useful life estimates, may distort operating performance at the property level.  Net operating income presented by us may not be comparable to net operating income reported by other equity REITs that define net operating income differently.  We believe that in order to facilitate a clear understanding of our operating results, net operating income should be examined in conjunction with income from continuing operations as presented in our condensed consolidated statements of income.  Net operating income should not be considered as an alternative to income from continuing operations as an indication of our performance or as an alternative to cash flows as a measure of liquidity or our ability to make distributions.

54



Table of Contents

Comparison of the three months ended March 31, 2012, to the three months ended March 31, 2011

The following table presents a comparison of the components of net operating income for our Same Properties and Non-Same Properties for the three months ended March 31, 2012, compared to the three months ended March 31, 2011, and a reconciliation of net operating income to income from continuing operations, the most directly comparable financial measure (dollars in thousands):

Three Months Ended March 31,

2012

2011

$ Change

% Change

Revenues:

Rental – Same Properties

$

86,480

$

86,164

$

316

%

Rental – Non-Same Properties

21,305

20,089

1,216

6

Total rental

107,785

106,253

1,532

1

Tenant recoveries – Same Properties

28,937

29,477

(540

)

(2

)

Tenant recoveries – Non-Same Properties

5,615

3,413

2,202

65

Total tenant recoveries

34,552

32,890

1,662

5

Other income – Same Properties

46

(8

)

54

(675

)

Other income – Non-Same Properties

2,583

785

1,798

229

Total other income

2,629

777

1,852

238

Total revenues – Same Properties

115,463

115,633

(170

)

Total revenues – Non-Same Properties

29,503

24,287

5,216

21

Total revenues

144,966

139,920

5,046

4

Expenses:

Rental operations – Same Properties

33,969

33,548

421

1

Rental operations – Non-Same Properties

9,441

7,513

1,928

26

Total rental operations

43,410

41,061

2,349

6

Net operating income:

Net operating income – Same Properties

81,494

82,085

(591

)

(1

)

Net operating income – Non-Same Properties

20,062

16,774

3,288

20

Total net operating income

101,556

98,859

2,697

3

Other expenses:

General and administrative

10,361

9,497

864

9

Interest

16,227

17,810

(1,583

)

(9

)

Depreciation and amortization

43,405

36,582

6,823

19

Loss on early extinguishment of debt

623

2,495

(1,872

)

(75

)

Total other expenses

70,616

66,384

4,232

6

Income from continuing operations

$

30,940

$

32,475

$

(1,535

)

(5

)%

Rental revenues

Total rental revenues for the three months ended March 31, 2012, increased by $1.5 million, or 1%, to $107.8 million, compared to $106.3 million for the three months ended March 31, 2011.  The increase was due to rental revenues from our Non-Same Properties, including two ground-up development projects that were completed and delivered after January 1, 2011, and three operating properties that were acquired subsequent to January 1, 2011.

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Tenant recoveries

Total tenant recoveries for the three months ended March 31, 2012, increased by $1.7 million, or 5%, to $34.6 million, compared to $32.9 million for the three months ended March 31, 2011.  The increase was primarily due to an increase in tenant recoveries of approximately $2.2 million from our Non-Same Properties, including two ground-up development projects that were completed and delivered after January 1, 2011, and three operating properties that were acquired subsequent to January 1, 2011.  As of March 31, 2012, approximately 95% of our leases (on a rentable square footage basis) were triple net leases, requiring tenants to pay substantially all real estate taxes, insurance, utilities, common area expenses, and other operating expenses (including increases thereto) in addition to base rent.

Other income

Other income for the three months ended March 31, 2012 and 2011, of $2.6 million and $0.8 million, respectively, represents construction management fees, interest, investment income, and storage income.  The increase of approximately $1.8 million is primarily due to an increase in investment income of approximately $1.7 million for the three months ended March 31, 2012, as compared to the three months ended March 31, 2011.

Rental operating expenses

Total rental operating expenses for the three months ended March 31, 2012, increased by $2.3 million, or 6%, to $43.4 million, compared to $41.1 million for the three months ended March 31, 2011.  Approximately $1.8 million of the increase was from an increase in rental operating expenses from our Non-Same Properties, including two ground-up development projects that were completed and delivered after January 1, 2011, and three operating properties that were acquired subsequent to January 1, 2011.  The remaining $0.4 million increase was from increases in rental operating expenses from our Same Properties.  The increase in rental operating expenses at our Same Properties was primarily attributable to an increase in property taxes, utilities, and common area repair and maintenance expenses.

General and administrative expenses

General and administrative expenses for the three months ended March 31, 2012, increased by $0.9 million, or 9%, to $10.4 million, compared to $9.5 million for the three months ended March 31, 2011.  As a percentage of total revenues, general and administrative expenses remained consistent for the three months ended March 31, 2012 and 2011, at approximately 7% of total revenues.

Interest expense

Interest expense for the three months ended March 31, 2012, decreased by $1.6 million, or 9%, to $16.2 million compared to $17.8 million for the three months ended March 31, 2011, detailed as follows (in thousands):

Three Months Ended March 31,

Interest expense

2012

2011

Change

Secured notes payable

$

10,109

$

11,880

$

(1,771

)

Unsecured senior notes payable

2,182

2,182

Unsecured senior line of credit

5,786

4,825

961

Unsecured senior bank term loans

4,728

3,054

1,674

Interest rate swap agreements

5,775

5,439

336

Unsecured senior convertible notes

222

3,465

(3,243

)

Amortization of loan fees and other

2,691

2,340

351

Capitalized interest

(15,266

)

(13,193

)

(2,073

)

Total interest expense

$

16,227

$

17,810

$

(1,583

)

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The decrease in total interest expense of $1.6 million was due to a decrease in interest expense on our secured notes payable and unsecured senior convertible notes, and was partially offset by increases in interest expense on our unsecured senior notes payable and unsecured senior bank term loans.  Interest on our secured notes payable decreased primarily due to the repayments of seven secured notes payable approximating $55.7 million since March 31, 2011.  Interest on unsecured senior convertible notes decreased due to the repurchases of our 3.70% Unsecured Senior Convertible Notes aggregating $204.9 million since March 2011.  The increase in interest expense on our unsecured senior bank term loans was primarily attributable to an increase in outstanding unsecured senior bank term loans from $1.0 billion at March 31, 2011, to $1.4 billion at March 31, 2012.  We have entered into certain interest rate swap agreements to hedge a portion of our exposure primarily related to variable interest rates associated with our unsecured senior line of credit and unsecured senior bank term loans (see “Liquidity and Capital Resources — Contractual Obligations – Interest Rate Swap Agreements”).

Depreciation and amortization

Depreciation and amortization for the three months ended March 31, 2012, increased by $6.8 million, or 19%, to $43.4 million, compared to $36.6 million for the three months ended March 31, 2011.  The increase resulted primarily from depreciation associated with two ground-up development projects that were completed and delivered after January 1, 2011, and three operating properties that were acquired subsequent to January 1, 2011.

Loss on early extinguishment of debt

During the three months ended March 31, 2012, we recognized a loss on early extinguishment of debt of approximately $0.6 million related to the write-off of unamortized loan fees, as a result of the early repayment of $250 million of our 2012 Unsecured Senior Bank Term Loan.  During the three months ended March 31, 2011, we recognized an aggregate loss on early extinguishment of debt of approximately $2.5 million related to the repurchase, in privately negotiated transactions, of approximately $96.1 million of our 3.70% Unsecured Senior Convertible Notes.

(Loss) income from discontinued operations, net

Loss from discontinued operations, net, of $29,000 for the three months ended March 31, 2012, reflects the results of operations of three properties classified as “held for sale” as of March 31, 2012.  Income from discontinued operations, net, of $150,000 for the three months ended March 31, 2011, reflects the results of operations of three properties classified as “held for sale” as of March 31, 2012, and the results of operating of one property sold during the three months ended December 31, 2011.

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Liquidity and capital resources

Overview

We expect to meet certain long-term liquidity requirements, such as for property acquisitions, development, redevelopment, other construction projects, capital improvements, tenant improvements, leasing costs, non-incremental revenue generating expenditures, and scheduled debt maturities, through net cash provided by operating activities, periodic asset sales, and long-term secured and unsecured indebtedness, including borrowings under our unsecured senior notes payable, unsecured senior line of credit, unsecured senior bank term loans, and the issuance of additional debt and/or equity securities.

We expect to continue meeting our short-term liquidity and capital requirements, as further detailed in this section, generally through our working capital and net cash provided by operating activities.  We believe that the net cash provided by operating activities will continue to be sufficient to enable us to make distributions necessary to continue qualifying as a REIT.

Over the next several years, our balance sheet, capital structure, and liquidity objectives are as follows:

· Reduce leverage as a percentage of total gross assets and improve our ratio of debt to earnings before interest, taxes, and depreciation and amortization;

· Maintain diverse sources of capital, including sources from net cash flows from operating activities, unsecured debt, secured debt, selective asset sales, joint ventures, perpetual preferred stock, and common stock;

· Manage the amount of debt maturing in a single year;

· Refinance outstanding medium-term variable rate bank debt with longer-term fixed rate debt;

· Mitigate unhedged variable rate debt exposure by transitioning our balance sheet debt from short-term and medium-term variable rate bank debt to long-term unsecured fixed rate debt and utilizing interest rate swap agreements in the interim period during this transition of debt;

· Maintain adequate liquidity from net cash provided by operating activities, cash and cash equivalents, and available borrowing capacity under our unsecured senior line of credit;

· Maintain available borrowing capacity under our unsecured senior line of credit in excess of 50% of the total commitments of $1.5 billion, except temporarily as necessary;

· Fund preferred stock and common stock dividends from net cash provided by operating activities;

· Retain net positive cash flows from operating activities after payment of dividends for reinvestment in acquisitions and/or development and redevelopment projects; and

· Reduce our non-income-producing assets as a percentage of our gross investment in real estate.

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Table of Contents

Cash flows

We report and analyze our cash flows based on operating activities, investing activities, and financing activities.  The following table summarizes changes in the Company’s cash flows for the three months ended March 31, 2012 and 2011 (in thousands):

Three Months Ended March 31,

2012

2011

Change

Net cash provided by operating activities

$

49,685

$

44,468

$

5,217

Net cash used in investing activities

(124,248

)

(86,262

)

(37,986

)

Net cash provided by financing activities

71,351

29,700

41,651

Operating activities

Cash flows provided by operating activities consisted of the following amounts (in thousands):

Three Months Ended March 31,

2012

2011

Change

Net cash provided by operating activities

$

49,685

$

44,468

$

5,217

Changes in assets and liabilities

19,801

21,504

(1,703

)

Net cash provided by operating activities before changes in assets and liabilities

$

69,486

$

65,972

$

3,514

Net cash provided by operating activities for the three months ended March 31, 2012, increased by $5.2 million, or 12%, to $49.7 million, compared to $44.5 million for the three months ended March 31, 2011.  The increase resulted primarily from an increase in net operating income from completed and leased development and redevelopment spaces, and increased revenues from three operating properties that were acquired subsequent to January 1, 2011.  Net cash provided by operating activities before changes in assets and liabilities for the three months ended March 31, 2012, increased by $3.5 million, to $69.5 million, compared to $66.0 million for the three months ended March 31, 2011.   We believe our cash flows from operating activities provide a stable source of cash to fund operating expenses.  As of March 31, 2012, approximately 95% of our leases (on a rentable square footage basis) were triple net leases, requiring tenants to pay substantially all real estate taxes, insurance, utilities, common area expenses, and other operating expenses (including increases thereto) in addition to base rent.  Our average occupancy rate for operating properties as of March 31, 2012, and December 31 of each year from 1998 to 2011 was approximately 95.1%.  Our average occupancy rate for operating and redevelopment properties as of March 31, 2012, and December 31 of each year from 1998 to 2011 was approximately 89.1%.

Investing activities

Net cash used in investing activities for the three months ended March 31, 2012, was $124.2 million, compared to $86.3 million for the three months ended March 31, 2011.  This increase consisted of the following amounts (in thousands):

Three Months Ended March 31,

2012

2011

Change

Additions to properties

$

(120,585

)

$

(74,287

)

$

(46,298

)

Purchase of properties

(19,946

)

(7,458

)

(12,488

)

Proceeds from sale of land parcel

22,250

22,250

Other

(5,967

)

(4,517

)

(1,450

)

Net cash used in investing activities

$

(124,248

)

$

(86,262

)

$

(37,986

)

The increase in net cash used in investing activities for the three months ended March 31, 2012, is primarily due to increased capital expenditures related to our redevelopment and development projects, as well as our acquisition of 6 Davis Drive in the Research Triangle Park market during the three months ended March 31, 2012.

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Table of Contents

Acquisitions

In February 2012, we acquired 6 Davis Drive, a 100,000 rentable square foot life science laboratory building located in the Research Triangle Park market, for approximately $20 million.  The building is 100% leased to a non-profit research institute.  The property also includes opportunities to develop at least three additional build-to-suit or multi-tenant buildings aggregating at least an additional 450,000 rentable square feet in an excellent location.  We expect to achieve a Stabilized Yield on cost on a cash and GAAP basis for the operating property of approximately 8.4% and 8.9%, respectively.  These yields assume a purchase price allocation of $11.8 million to the 100,000 rentable square foot operating property and $8.3 million to the land for future additional buildings.

Acquisition

Operating

Occupancy

Purchase Price of

Stabilized Yield

Property/Market

Date

RSF

at Acquisition

Operating Property

Cash

GAAP

6 Davis Drive, Research Triangle Park

February 2012

100,000

100%

$

11,806

8.4%

8.9%

Capital expenditures and tenant improvements

See discussion in “Uses of Capital – Capital Expenditures, Tenant Improvements, and Leasing Costs.”

Financing activities

Net cash flows provided by financing activities for the three months ended March 31, 2012, increased by $41.7 million, to $71.4 million, compared to $29.7 million for the three months ended March 31, 2011.  This increase consisted of the following amounts (in thousands):

Three Months Ended March 31,

2012

2011

Change

Proceeds from issuance of unsecured senior notes payable

$

544,649

$

$

544,649

Principal reductions of secured notes payable

(2,688

)

(2,991

)

303

Principal borrowings from unsecured senior line of credit

248,000

460,000

(212,000

)

Repayments of borrowings from unsecured senior line of credit

(451,000

)

(279,000

)

(172,000

)

Repayment of unsecured senior term loan

(250,000

)

(250,000

)

Repurchases of unsecured senior convertible notes

(83,801

)

(98,590

)

14,789

Proceeds from issuance of preferred stock

124,868

124,868

Dividend payments

(37,475

)

(32,012

)

(5,463

)

Other

(21,202

)

(17,707

)

(3,495

)

Net cash provided by financing activities

$

71,351

$

29,700

$

41,651

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Debt issuance

During the three months ended March 31, 2012, we completed the issuance of our unsecured senior notes payable, as summarized in the table below (in thousands):

As of March 31, 2012

Maturity

Amount
Outstanding (1)

Effective
Interest Rate (2)

Date
of Issuance

Unsecured senior notes payable

4/1/2022

$

549,536

4.61%

2/29/2012

(1) Amount outstanding is presented net of $0.5 million of unamortized discount.

(2) Effective interest rate on issuance date including the effects of discounts on the notes.

Debt repayments

During the three months ended March 31, 2012, we retired substantially all of our 3.70% Unsecured Senior Convertible Notes and the entire $250 million outstanding balance on our 2012 Unsecured Senior Bank Term Loan.  In conjunction with the retirement of our 2012 Unsecured Senior Bank Term Loan, we recognized a charge of approximately $0.6 million related to the write-off of unamortized loan fees. The following table outlines certain debt repayments for the three months ended March 31, 2012 (in thousands):

Three Months Ended March 31, 2012

Loss on Early

Debt

Extinguishment

Repayments

of Debt

Repurchase of 3.70% Unsecured Senior Convertible Notes

$

83,801

$

Repayment of 2012 Unsecured Senior Bank Term Loan

250,000

623

$

333,801

$

623

6.45% series E preferred stock offering

In March 2012, we completed a public offering of 5,200,000 shares of our 6.45% Series E Preferred Stock.  The shares were issued at a price of $25.00 per share, resulting in net proceeds of approximately $124.9 million (after deducting underwriters’ discounts and other offering costs).  The proceeds were initially used to reduce the outstanding borrowings under our unsecured senior line of credit. We then borrowed funds under our unsecured senior line of credit to redeem our “Series C Preferred Stock”.  The dividends on our Series E Preferred Stock are cumulative and accrue from the date of original issuance.  We pay dividends quarterly in arrears at an annual rate of 6.45%, or $1.6125 per share.  Our Series E Preferred Stock has no stated maturity date, is not subject to any sinking fund or mandatory redemption provisions, and is not redeemable before March 15, 2017, except to preserve our status as a REIT.  On and after March 15, 2017, we may, at our option, redeem the Series E Preferred Stock, in whole or in part, at any time for cash at a redemption price of $25.00 per share, plus any accrued and unpaid dividends on the Series E Preferred Stock up to, but excluding, the redemption date.  In addition, upon the occurrence of a change of control, we may, at our option, redeem the Series E Preferred Stock, in whole or in part, within 120 days after the first date on which such change of control occurred, by paying $25.00 per share, plus any accrued and unpaid dividends up to, but excluding, the date of redemption.  Investors in our Series E Preferred Stock generally have no voting rights.

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Table of Contents

8.375% series C preferred stock redemption

In March 2012, we called for redemption all 5,185,500 outstanding shares of our 8.375% Series C Preferred Stock at a redemption price equal to $25.00 per share on the redemption date of April 13, 2012.  Separately, we announced in March 2012, that we would pay a dividend on the Series C Preferred Stock for the holders of record as of March 30, 2012.  The preferred stock redemption liability included in the accompanying condensed consolidated balance sheet as of March 31, 2012, reflects the Series C Preferred Stock at its redemption amount of $129.6 million, excluding the portion relating to the accumulated and unpaid dividends.  As a result of calling our Series C Preferred Stock for redemption in March 2012, we recognized a preferred stock redemption charge of approximately $6.0 million for costs related to the issuance and redemption of our Series C Preferred Stock.  This amount represents the excess of the fair value of the consideration transferred to the holders over the carrying amount of the preferred stock.  The accumulated and unpaid dividends relating to the Series C Preferred Stock as of March 31, 2012, have been included in dividends payable in the accompanying condensed consolidated balance sheet.  The Series C Preferred Stock was redeemed on April 13, 2012.

Dividends

During the three months ended March 31, 2012 and 2011, we paid the following dividends (in thousands):

Three Months Ended

March 31,

2012

2011

Change

Common stock dividends

$

30,386

$

24,923

$

5,463

Series C Preferred Stock dividends

2,714

2,714

Series D Preferred Stock dividends

4,375

4,375

$

37,475

$

32,012

$

5,463

The increase in dividends paid on our common stock is due to an increase in dividends to $0.49 per common share for the three months ended March 31, 2012, from $0.45 per common share for the three months ended March 31, 2011.  The increase was also due to an increase in common stock outstanding.  Total common stock outstanding as of December 31, 2011, was 61,560,472 shares, compared to 54,966,925 shares as of December 31, 2010. Total common stock outstanding as of March 31, 2012, was 61,634,645 shares, compared to 55,049,730 shares as of March 31, 2011.

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Table of Contents

Sources and uses of capital

We expect that our principal liquidity needs for the year ended December 31, 2012, will be satisfied by the following multiple sources of capital as shown in the table below. There can be no assurance that our sources and uses of capital will not be materially higher or lower than these expectations.

Guidance for the Year Ended December 31, 2012 (in millions)

Completed

Projected

Total

Sources of capital

Net cash provided by operating activities less dividends

$

12

$

64

$

76

(2)

Asset and land sales

31

81

112

(3)

Unsecured senior notes payable

550

550

Secured construction financing

24

24

Series E Preferred Stock issuance

125

125

Debt, equity, and joint venture capital

(84

) (4)

331

(5)

247

(6)

Total sources of capital

$

634

$

500

$

1,134

Uses of capital

Development, redevelopment, and construction

$

130

$

482

$

612

(7)

Acquisitions

36

10

46

Secured debt repayments

3

8

11

(8)

2012 Unsecured Senior Bank Term Loan repayment

250

250

(8)

3.70% Unsecured Senior Convertible Notes repurchase

85

85

(8)

Series C Preferred Stock Redemption

130

130

(8)

Total uses of capital

$

634

$

500

$

1,134

(1) Includes actuals through March 31, 2012, and projections through December 31, 2012.

(2) See table of “Key net operating income projection assumptions and Key expense and other projection assumptions” on page 47.

(3) Represents an estimate of sources of capital from asset and land sales, including sale of land parcel for $31 million in March 2012, properties “held for sale” as of March 31, 2012, with a contract price of approximately $16 million, and projected additional dispositions of approximately $65 million.

(4) Represents additional amounts used to pay down outstanding borrowings on our unsecured senior line of credit.

(5) Includes $129.6 million of borrowings under our $1.5 billion unsecured senior line of credit on April 13, 2012, related to the redemption of our 8.375% Series C Preferred Stock.

(6) Represents an estimate of sources of capital from debt, equity, and joint ventures in order to fund our projected uses of capital.

(7) See “Cost to Complete” columns in the tables related to construction in progress (page 49) for additional details underlying this estimate.

(8) Based upon contractually scheduled payments or maturity dates.

The key assumptions behind the sources and uses of capital in the table above are a favorable capital market environment and performance of our core operations in areas such as delivery of current and future development and redevelopment projects and leasing activity and renewals. Our expected sources and uses of capital are subject to a number of variables and uncertainties, including those discussed under the forward looking statements section in Part I under the headings “Management’s Discussion and Analysis of Financial Condition and Results of Operations” and “Risk Factors,” of our annual report on Form 10-K for the year ended December 31, 2011. We expect to update our forecast of sources and uses of capital on a quarterly basis.

Sources of capital

Unsecured senior notes payable

In February 2012, we completed a $550 million public offering of our unsecured senior notes payable at a stated interest rate of 4.60%.  The unsecured senior notes payable were priced at 99.915% of the principal amount with a yield to maturity of 4.61% and are due April 1, 2022.  The unsecured senior notes payable are unsecured obligations of the Company and are fully and unconditionally guaranteed by Alexandria Real Estate Equities, L.P., a wholly owned subsidiary of the Company.  The unsecured senior notes payable rank equally in right of payment with all other senior unsecured indebtedness. However, the unsecured senior notes payable are effectively subordinated to existing and future mortgages and other secured indebtedness (to the extent of the value of the collateral securing such indebtedness) and to all existing and future preferred equity and liabilities, whether secured or unsecured, of the Company’s subsidiaries, other than Alexandria Real Estate Equities, L.P.  We used the net proceeds of this offering to prepay the outstanding principal balance of $250 million on our 2012 Unsecured Senior Bank Term Loan and to reduce the outstanding balance on our unsecured senior line of credit.

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Table of Contents

Unsecured senior line of credit

We use our unsecured senior line of credit to fund working capital, construction activities, and, from time to time, acquisition of properties.  As of March 31, 2012, we had $1.3 billion available under our $1.5 billion unsecured senior line of credit.

Cash and cash equivalents

As of March 31, 2012, we had approximately $77.4 million of cash and cash equivalents.

Restricted cash

Restricted cash consisted of the following as of March 31, 2012, and December 31, 2011 (in thousands):

March 31,
2012

December 31,
2011

Funds held in trust under the terms of certain secured notes payable

$

18,827

$

12,724

Funds held in escrow related to construction projects

5,648

5,648

Other restricted funds

15,328

4,960

Total

$

39,803

$

23,332

The funds held in escrow related to construction projects will be used to pay for certain construction costs.

Uses of capital

Capital expenditures, tenant improvements, and leasing costs

The following table summarizes the components of our total capital expenditures for the three months ended March 31, 2012 and 2011, which includes interest, property taxes, insurance, payroll costs, and other indirect project costs (in thousands):

Three Months Ended
March 31,

2012

2011

Development

$

32,957

$

11,567

Redevelopment

46,273

18,909

Preconstruction

4,900

13,041

Projects in India and China

16,952

22,490

Generic infrastructure/building improvement projects (1)

29,185

10,475

Total construction spending

$

130,267

$

76,482

(1) Includes amounts shown in table on the following page.

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Table of Contents

The following table summarizes the components of our total projected capital expenditures for the remainder of the year ended December 31, 2012, and the period thereafter. Expenditures include indirect project costs, including interest, property taxes, insurance, and payroll costs (in thousands):

Nine Months
Ended December 31,
2012

Thereafter

Development

$

139,275

$

125,912

Redevelopment

157,242

58,100

Preconstruction

36,814

TBD

(1)

Projects in India and China

37,809

TBD

(1)

Generic infrastructure/building improvement projects

70,030

TBD

(1)

Future projected construction projects

40,598

TBD

(1)

Total construction spending

$

481,768

$

184,012

(1) Estimated spending beyond 2012 related to preconstruction, projects in India and China, generic infrastructure improvements, major capital spending, and projected construction projects will be determined at a future date and is contingent upon many factors.

The table below shows the average per square foot property-related non-revenue-enhancing capital expenditures, tenant improvements, and leasing costs (excluding capital expenditures and tenant improvements that are recoverable from tenants, revenue-enhancing, or related to properties that have undergone redevelopment) for the three months ended March 31, 2012 and 2011:

Three Months Ended
March 31,

Non-incremental revenue generating capital expenditures (1):

2012

2011

Major capital expenditures

$

$

287,500

Other building improvements

$

210,083

$

320,500

Square feet in asset base

13,495,952

13,198,744

Per square foot:

Major capital expenditures

$

$

0.02

Other building improvements

$

0.02

$

0.02

Tenant improvements and leasing costs:

Re-tenanted space (2)

Tenant improvements and leasing costs

$

672,733

$

255,990

Re-tenanted square feet

63,241

66,353

Per square foot

$

10.64

$

3.86

Renewal space

Tenant improvements and leasing costs

$

1,345,072

$

546,936

Renewal square feet

211,288

267,058

Per square foot

$

6.37

$

2.05

(1)

Major capital expenditures consist of roof replacements and HVAC systems that are typically identified and considered at the time a property is acquired. Other building improvements exclude major capital expenditures.

(2)

Excludes space that has undergone redevelopment before re-tenanting.

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Table of Contents

We expect our future capital expenditures, tenant improvements, and leasing costs (excluding capital expenditures and tenant improvements that are recoverable from tenants, revenue-enhancing, or related to properties that have undergone redevelopment) on a per square foot basis to be approximately in the amount shown in the preceding table.

Capitalized interest for the three months ended March 31, 2012 and 2011, of approximately $15.3 million and $13.2 million, respectively, is included in investments in real estate, net, on the accompanying condensed consolidated balance sheets, as well as the table on the preceding page summarizing total capital expenditures.  In addition, we capitalized payroll and other indirect project costs related to development, redevelopment, and construction projects, including projects in India and China, aggregating approximately $3.1 million and $4.4 million for the three months ended March 31, 2012 and 2011, respectively. Such costs are also included in the table on the preceding page.

We capitalize interest cost as a cost of the project only during the period for which activities necessary to prepare an asset for its intended use are ongoing, provided that expenditures for the asset have been made and interest cost is incurred.  Indirect project costs, including personnel, construction administration, legal fees, and office costs that clearly relate to projects under construction are capitalized during the period in which activities necessary to prepare the asset for its intended use take place.  Additionally, should activities necessary to prepare an asset for its intended use cease, interest, taxes, insurance, and certain other direct project costs related to this asset would be expensed as incurred.  When construction activities cease and the asset is ready for its intended use, the asset is transferred out of construction in progress and classified as rental properties, net.  Additionally, if vertical aboveground construction is not initiated at completion of preconstruction activities, the land parcel will be classified as land held for future development.  Expenditures for repair and maintenance are expensed as incurred.

We also capitalize and defer initial direct costs to originate leases with independent third parties related to evaluating a prospective lessee’s financial condition, negotiating lease terms, preparing the lease agreement, and closing the lease transaction. Costs that we have capitalized and deferred relate to successful leasing transactions, result directly from and are essential to the lease transaction, and would not have been incurred had that leasing transaction not occurred.  The initial direct costs capitalized and deferred also include the portion of our employees’ total compensation and payroll-related fringe benefits directly related to time spent performing activities previously described and related to the respective lease that would not have been performed but for that lease. Total initial direct leasing costs capitalized during the three months ended March 31, 2012 and 2011, were approximately $11.5 million and $14.8 million, respectively, of which approximately $2.4 million and $3.8 million, respectively, represented capitalized and deferred payroll costs directly related and essential to our leasing activities during such periods.

Acquisitions

In February 2012, we acquired 6 Davis Drive, a 100,000 rentable square foot life science laboratory building located in the Research Triangle Park market, for approximately $20 million.  The building is 100% leased to a non-profit research institute.  The property also includes opportunities to develop at least three additional build-to-suit or multi-tenant buildings aggregating at least an additional 450,000 rentable square feet in an excellent location.  We expect to achieve a Stabilized Yield on a cash and GAAP basis for the operating property of approximately 8.4% and 8.9%, respectively.  These yields assume a purchase price allocation of $11.8 million to the 100,000 rentable square foot operating property and $8.3 million to the land for future additional buildings.

Acquisition

Operating

Occupancy

Purchase Price of

Stabilized Yield

Property/Market

Date

RSF

at Acquisition

Operating Property

Cash

GAAP

6 Davis Drive, Research Triangle Park

February 2012

100,000

100%

$

11,806

8.4%

8.9%

Dividends

We are required to distribute 90% of our REIT taxable income on an annual basis in order to continue to qualify as a REIT for federal income tax purposes.  Accordingly, we intend to make, but are not contractually bound to make, regular quarterly distributions to preferred and common stockholders from cash flow from operating activities.  All such distributions are at the discretion of our Board of Directors.  We may be required to use borrowings under our unsecured senior line of credit, if necessary, to meet REIT distribution requirements and maintain our REIT status.  We consider market factors and our performance in addition to REIT requirements in determining distribution levels.  Our forecasts of taxable income and distributions do not require significant increases in our annual common stock dividends on a per share basis in order to distribute at least 90% of our REIT taxable income for the period January 1, 2012, through December 31, 2012.

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Contractual obligations and commitments

Contractual obligations as of March 31, 2012, consisted of the following (in thousands):

Payments by Period

Total

2012

2013-2014

2015-2016

Thereafter

Secured notes payable (1) (2)

$

722,437

$

8,170

$

357,852

$

240,625

$

115,790

Unsecured senior notes payable (1) (3)

550,000

550,000

Unsecured senior line of credit (4)

167,000

167,000

2016 Unsecured Senior Bank Term Loan (5)

750,000

750,000

2017 Unsecured Senior Bank Term Loan (6)

600,000

600,000

Unsecured senior convertible notes (1)

1,250

250

1,000

Estimated interest payments on fixed rate and hedged variable rate debt (7)

270,949

85,929

115,012

37,851

32,157

Estimated interest payments on variable rate debt (8)

71,836

4,224

23,263

43,451

898

Ground lease obligations

683,400

9,379

21,333

20,429

632,259

Other obligations (9)

56,071

1,331

1,645

1,809

51,286

Total

$

3,872,943

$

109,033

$

519,355

$

1,261,165

$

1,983,390

(1) Amounts represent principal amounts due and exclude unamortized discounts reflected on the condensed consolidated balance sheets.

(2) Amounts include noncontrolling interests’ share of scheduled principal maturities of approximately $21.4 million, of which approximately $20.9 million matures in 2014.  See “Secured Notes Payable” below for additional information.

(3) In February 2012, we completed a $550 million public offering of unsecured senior notes payable at a stated interest rate of 4.60%.  The unsecured senior notes payable were priced at 99.915% of the principal amount with a yield to maturity of 4.61% and are due April 1, 2022.

(4) The maturity date of our unsecured senior line of credit is January 2015, assuming we exercise our sole right to extend the maturity twice by an additional six months.  See “Unsecured senior line of credit” below for additional information.

(5) Our 2016 unsecured senior bank term loan (“2016 Unsecured Senior Bank Term Loan”) matures in June 2016, assuming we exercise our sole right to extend the maturity by one year.

(6) Our 2017 unsecured senior bank term loan (“2017 Unsecured Senior Bank Term Loan”) matures in January 2017, assuming we exercise our sole right to extend the maturity by one year.

(7) Estimated interest payments on our fixed rate debt and hedged variable rate debt were calculated based upon contractual interest rates, including the impact of interest rate swap agreements, interest payment dates, and scheduled maturity dates.

(8) The interest payments on variable rate debt were calculated based on the interest rates in effect as of March 31, 2012.

(9) Includes our share, of approximately $48.4 million, of minimum borrowing amounts related to a secured note payable due in 2017 held by our unconsolidated real estate entity.

Secured notes payable

Secured notes payable as of March 31, 2012, consisted of 13 notes secured by 38 properties.  Our secured notes payable typically require monthly payments of principal and interest; they had weighted average interest rates of approximately 5.77% as of March 31, 2012.  Noncontrolling interests’ share of secured notes payable aggregated approximately $21.4 million as of March 31, 2012.  As of March 31, 2012, our secured notes payable, including unamortized discounts, were composed of approximately $645.1 million and $76.7 million of fixed and variable rate debt, respectively.

Unsecured senior notes payable

In February 2012, we completed a public offering of our unsecured senior notes payable, and raised approximately $550 million in principal amount at a stated interest rate of 4.60%.  The unsecured senior notes payable were priced at 99.915% of the principal amount with a yield to maturity of 4.61% and are due on April 1, 2022.  The unsecured senior notes payable are unsecured obligations of the Company and are fully and unconditionally guaranteed by Alexandria Real Estate Equities, L.P., a wholly owned subsidiary of the Company.  The unsecured senior notes payable rank equally in right of payment with all other senior unsecured indebtedness. However, the unsecured senior notes payable are effectively subordinated to existing and future mortgages and other secured indebtedness (to the extent of the value of the collateral securing such indebtedness) and to all existing and future preferred equity and liabilities, whether secured or unsecured, of the Company’s subsidiaries, other than Alexandria Real Estate Equities, L.P.  We used the net proceeds of this offering to prepay the outstanding principal balance of $250 million on our 2012 Unsecured Senior Bank Term Loan and to reduce the outstanding balance on our unsecured senior line of credit.

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The requirements of the key financial covenants under our unsecured senior notes payable are as follows:

Covenant Ratios (1)

Requirement

Actual (2)

Total Debt to Total Assets

Less than or equal to 60%

37%

Consolidated EBITDA to interest expense

Greater than or equal to 1.5x

5.4x

Unencumbered Total Asset Value to Unsecured Debt

Greater than or equal to 150%

279%

Secured Debt to Total Assets

Less than or equal to 40%

10%

(1)

For a definition of the ratios used in the table above and related footnotes, refer to the Indenture dated February 29, 2012, which governs the unsecured senior notes payable, which was filed as exhibits to our reports filed with the SEC.

(2)

Actual covenants are calculated pursuant to the specific terms of the agreement.

In addition, the terms of the agreement, among other things, limit the ability of the Company, Alexandria Real Estate Equities, L.P., and the Company’s subsidiaries to (1) consummate a merger, or consolidate or sell all or substantially all of the Company’s assets, and (2) incur certain secured or unsecured indebtedness.

Unsecured senior line of credit

We use our unsecured senior line of credit to fund working capital, and, from time to time, construction activities.  Our objective is to maintain significant unused borrowing capacity, generally greater than 50% of our $1.5 billion unsecured senior line of credit.  Over the next several years, we anticipate refinancing a portion of our outstanding balance under our unsecured senior bank term loans with capital from unsecured senior notes payable, unsecured senior bank loans, and other capital, including proceeds from selective sales of assets.

In April 2012, we amended our $1.5 billion unsecured senior line of credit, with Merrill Lynch, Pierce, Fenner & Smith Incorporated, J.P. Morgan Securities Inc., and Citigroup Global Markets Inc. as joint lead arrangers; Bank of America N.A., as administrative agent; and certain lenders, to extend the maturity date of our unsecured senior line of credit, provide an accordion option for up to an additional $500 million, and reduce the interest rate for outstanding borrowings. The maturity date of the unsecured senior line of credit was extended to April 2017, provided that we exercise our sole right to extend this maturity date twice by an additional six months after each exercise. Borrowing under the unsecured senior line of credit will bear interest at LIBOR or the base rate specified in the amended credit agreement, plus in either case the Applicable Margin. The Applicable Margin for LIBOR borrowings under the unsecured senior line of credit was set at 1.20%, down from 2.40% in effect immediately prior to the modification. In addition to the Applicable Margin, our unsecured senior line of credit is subject to an annual facility fee of 0.25%.  In connection with the modification of our unsecured senior line of credit in April 2012, we recognized a loss on early extinguishment of debt of approximately $1.6 million related to the write-off of a portion of unamortized loan fees.

As of March 31, 2012, we had outstanding borrowings of $167 million, representing 11% of total borrowing capacity, under our $1.5 billion unsecured senior line of credit . The weighted average interest rate, including the impact of our interest rate swap agreements, for our unsecured senior line of credit was approximately 2.7% as of March 31, 2012.

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The requirements of the key financial covenants under our unsecured senior line of credit and unsecured senior bank term loans based upon agreements effective April 30, 2012, are as follows:

Covenant Ratios (1)

Requirement

Actual (3)

Total Debt to Total Assets (3)

Less than or equal to 60.0% (4)

34%

Consolidated EBITDA to Interest Expense (5)

Greater than or equal to 1.50x

2.5x

Secured Debt to Total Assets (6)

Less than or equal to 40.0% (4)

9%

Unsecured Leverage Ratio

Less than or equal to 60.0% (4)

36%

Unsecured Interest Coverage Ratio

Greater than or equal to 1.75x

8.9x

(1)

For a definition of the ratios used in the table above and related footnotes, refer to the (“Amended Credit Agreement”) dated as of April 30, 2012, which will be filed as an exhibit to our report filed with the SEC.

(2)

Actual covenants are calculated pursuant to the specific terms of each agreement.

(3)

Under the Amended Credit Agreement, this ratio is referred to as the Leverage Ratio.

(4)

These ratios may increase by an additional 5% in connection with a Material Acquisition, as defined, for up to four quarters.

(5)

Under the Amended Credit Agreement, this ratio is referred to as the Fixed Charge Coverage Ratio.

(6)

Under the Amended Credit Agreement, this ratio is referred to as the Secured Debt Ratio.

In addition, the terms of the agreements restrict, among other things, certain investments, indebtedness, distributions, mergers, developments, land, and borrowings available under our unsecured senior line of credit and unsecured senior bank term loans for developments, land, and encumbered and unencumbered assets.  The terms of the agreements also limit our ability to pay distributions to our shareholders in excess of the greater of (1) 95% of consolidated Funds from Operations (“FFO,” as defined in the Third Amendment) for the preceding four quarters and (2) the minimum amount sufficient to permit us to maintain our qualification as a REIT for federal income tax purposes or the amount necessary to avoid the payment of federal or state income or excise tax.  In addition, we are prohibited from paying cash dividends in excess of the amount necessary for us to qualify for taxation as a REIT if a default or an event of default exists.  As of March 31, 2012 and 2011, we were in compliance with all such covenants.  Management continuously monitors the Company’s compliance and projected compliance with the covenants.  We expect to continue meeting the requirements of our debt covenants in the short term and long term.  However, in the event of an economic slowdown, crisis in the credit markets, or rising cost of capital, there is no certainty that we will be able to continue to satisfy all of the covenant requirements.  Additionally, we may be required to reduce our outstanding borrowings under our unsecured senior line of credit and unsecured senior bank term loans in order to maintain compliance with one or more covenants.

As of March 31, 2012, we had 58 lenders providing commitments under our unsecured senior line of credit and unsecured senior bank term loans.  During the three months ended March 31, 2012, all lenders under our unsecured senior line of credit funded all borrowings requested under the loan agreement. In the future, if one or more such lenders fail to fund a borrowing request, we may not be able to borrow funds necessary for working capital, construction activities, dividend payments, debt repayment, monthly debt service, and other capital requirements. The failure of one or more lenders to fund their share of a borrowing request may have a material impact on our financial statements.

2016 unsecured senior bank term loan

In February 2011, we entered into a $250 million unsecured senior bank term loan.  In June 2011, we amended this $250 million 2016 Unsecured Senior Bank Term Loan to, among other things, increase the borrowings from $250 million to $750 million and extend the maturity from January 2015 to June 2016, assuming we exercise our sole right to extend the maturity date by one year.  Borrowings under the 2016 Unsecured Senior Bank Term Loan bear interest at LIBOR, or the specified base rate, plus in either case, a margin specified in the amended unsecured senior bank term loan agreement.  The applicable margin for the LIBOR borrowings under the 2016 Unsecured Senior Bank Term Loan as of March 31, 2012, was 1.65%.  Under the 2016 Unsecured Senior Bank Term Loan agreement, the financial covenants are identical to the financial covenants required under our existing unsecured senior line of credit.  The 2016 Unsecured Senior Bank Term Loan may be repaid at any date prior to maturity without a prepayment penalty.  The net proceeds from this amendment were used to reduce outstanding borrowings on the 2012 Unsecured Senior Bank Term Loan from $750 million to $250 million.

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2017 unsecured senior bank term loan

In December 2011, we closed a $600 million 2017 Unsecured Senior Bank Term Loan, which matures in January 2017, assuming we exercise our sole right to extend the maturity date by one year.  Borrowings under the 2017 Unsecured Senior Bank Term Loan bear interest at LIBOR, or the specified base rate, plus in either case, a margin specified in the unsecured senior bank term loan agreement.  The applicable margin for the LIBOR borrowings under the 2017 Unsecured Senior Bank Term Loan as of March 31, 2012, was 1.5%.  The 2017 Unsecured Senior Bank Term Loan may be repaid at any date prior to maturity without a prepayment penalty.  The net proceeds from this 2017 Unsecured Senior Bank Term Loan were used to reduce outstanding borrowings on our unsecured senior line of credit.

Unsecured senior convertible notes

During January 2012, we repurchased approximately $83.8 million in principal amount of our 3.70% Unsecured Senior Convertible Notes at par, pursuant to options exercised by holders thereof under the indenture governing the notes.  We did not recognize a gain or loss as a result of this repurchase.  As of March 31, 2012, $1.0 million of our 3.70% Unsecured Senior Convertible Notes remained outstanding.

Estimated interest payments

Estimated interest payments on our fixed rate debt and hedged variable rate debt were calculated based upon contractual interest rates, including the impact of interest rate swap agreements, interest payment dates, and scheduled maturity dates. As of March 31, 2012, approximately 95% of our debt was fixed rate debt or variable rate debt subject to interest rate swap agreements. See additional information regarding our interest rate swap agreements under “Liquidity and Capital Resources Contractual Obligations and Commitments – Interest Rate Swap Agreements.”  The remaining 5% of our debt is unhedged variable rate debt based primarily on LIBOR. Interest payments on our unhedged variable rate debt have been calculated based on interest rates in effect as of March 31, 2012.  See additional information regarding our debt under Note 5 to our condensed consolidated financial statements appearing elsewhere in this quarterly report on Form 10-Q.

Ground lease obligations

Ground lease obligations as of March 31, 2012, included leases for 21 of our properties and six land development parcels.  These lease obligations have remaining lease terms from 22 to 99 years, excluding extension options.

Commitments

In addition to the above, as of March 31, 2012, remaining aggregate costs under contract for the construction of properties undergoing development, redevelopment, and generic life science infrastructure improvements under the terms of leases approximated $249.5 million.  We expect payments for these obligations to occur over one to three years, subject to capital planning adjustments from time to time.  We are also committed to funding approximately $57.9 million for certain investments over the next six years.

A wholly owned subsidiary of the Company previously executed a ground lease, as ground lessee, for the development site in New York City located at and adjacent to 450 East 29 th Street.  That ground lease requires the construction of a second building approximating 407,000 rentable square feet to commence no later than October 31, 2013.  Commencement of construction of the second building includes, among other things, site preparation in order to accommodate a construction crane, erection of a construction crane, renewal of permits, and updating of the construction plans and specifications. The ground lease provides further that substantial completion of the second building occur by October 31, 2015, requiring satisfying conditions that include substantially completed construction in accordance with the plans and the issuance of either temporary or permanent certificates of occupancy for the core and shell.  The ground lease also provides that by October 31, 2016, the ground lessee obtain a temporary or permanent certificate of occupancy for the core and shell of both the first building (which has occurred) and the second building.  In each case, the target dates above are subject to force majeure, to contractual cure rights, to other legal remedies available to ground lessees generally, and to change for any reason by agreement between both parties under the ground lease.  Lastly, if the above dates are not met, the ground lease provides contractual cure rights and the ground lease does not provide for the payment of additional rent, a late fee, or other monetary penalty.

Off-balance sheet arrangements

Our off-balance sheet arrangements consist of our investment in a real estate entity that is a variable interest entity for which we are not the primary beneficiary.  We account for the real estate entity under the equity method.  The debt held by the unconsolidated real estate entity is secured by the land parcel owned by the entity, and is non-recourse to us.  See Notes 2 and 3 to our condensed consolidated financial statements appearing elsewhere in this quarterly report on Form 10-Q.

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Interest rate swap agreements

We utilize interest rate swap agreements to hedge a portion of our exposure to variable interest rates primarily associated with our unsecured senior line of credit and unsecured senior bank term loans.  These agreements involve an exchange of fixed and floating rate interest payments without the exchange of the underlying principal amount (the “notional amount”).  Interest received under all of our interest rate swap agreements is based on the one-month LIBOR rate.  The net difference between the interest paid and the interest received is reflected as an adjustment to interest expense.

The following table summarizes our interest rate swap agreements as of March 31, 2012 (dollars in thousands):

Notional Amount in

Effect as of

Transaction
Date

Effective
Date

Termination
Date

Interest Pay
Rate (1)

Fair Value as of
March 31, 2012

March 31,
2012

December 31,
2013

December 31,
2014

December 2006

December 29, 2006

March 31, 2014

4.990

%

$

(4,582

)

$

50,000

$

50,000

$

October 2007

October 31, 2007

September 30, 2012

4.546

(1,082

)

50,000

October 2007

October 31, 2007

September 30, 2013

4.642

(3,243

)

50,000

October 2007

July 1, 2008

March 31, 2013

4.622

(1,083

)

25,000

October 2007

July 1, 2008

March 31, 2013

4.625

(1,084

)

25,000

December 2006

November 30, 2009

March 31, 2014

5.015

(6,910

)

75,000

75,000

December 2006

November 30, 2009

March 31, 2014

5.023

(6,922

)

75,000

75,000

December 2006

December 31, 2010

October 31, 2012

5.015

(2,829

)

100,000

December 2011

December 30, 2011

December 31, 2012

0.480

(388

)

250,000

December 2011

December 30, 2011

December 31, 2012

0.480

(388

)

250,000

December 2011

December 30, 2011

December 31, 2012

0.480

(194

)

125,000

December 2011

December 30, 2011

December 31, 2012

0.480

(194

)

125,000

December 2011

December 30, 2011

December 31, 2012

0.495

(208

)

125,000

December 2011

December 30, 2011

December 31, 2012

0.508

(220

)

125,000

December 2011

December 31, 2012

December 31, 2013

0.640

(457

)

250,000

December 2011

December 31, 2012

December 31, 2013

0.640

(458

)

250,000

December 2011

December 31, 2012

December 31, 2013

0.644

(234

)

125,000

December 2011

December 31, 2012

December 31, 2013

0.644

(234

)

125,000

December 2011

December 31, 2013

December 31, 2014

0.977

(284

)

250,000

December 2011

December 31, 2013

December 31, 2014

0.976

(284

)

250,000

Total

$

(31,278

)

$

1,450,000

$

950,000

$

500,000

(1) In addition to the interest pay rate, borrowings outstanding under our unsecured senior line of credit and unsecured senior bank term loans include an applicable margin shown on page 17.

We have entered into master derivative agreements with each counterparty.  These master derivative agreements (all of which are adapted from the standard International Swaps and Derivatives Association, Inc. form) define certain terms between the Company and each counterparty to address and minimize certain risks associated with our interest rate swap agreements.  In order to limit our risk of non-performance by an individual counterparty under our interest rate swap agreements, our interest rate swap agreements are spread among various counterparties.  As of March 31, 2012, the largest aggregate notional amount in effect at any single point in time with an individual counterparty was $375 million.  If one or more of our counterparties fail to perform under our interest rate swap agreements, we may incur higher costs associated with our variable rate LIBOR-based debt than the interest costs we originally anticipated.

As of March 31, 2012, our interest rate swap agreements were classified in accounts payable, accrued expenses, and tenant security deposits based upon their respective fair values, aggregating a liability balance of approximately $31.3 million with the offsetting adjustment reflected as unrealized losses in accumulated other comprehensive loss in total equity.  Balances in accumulated other comprehensive loss are recognized in the period during which the forecasted hedge transactions affect earnings.  We have not posted any collateral related to our interest rate swap agreements.  For the three months ended March 31, 2012 and 2011, approximately $5.8 million and $5.4 million, respectively, was reclassified from accumulated other comprehensive income to interest expense as an increase to interest expense.  During the next 12 months, we expect to reclassify approximately $19.8 million from accumulated other comprehensive loss to interest expense as an increase to interest expense.

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Table of Contents

Other resources and liquidity requirements

We are eligible to file a shelf registration statement with the SEC, under which we may offer common stock, preferred stock, debt, and other securities.  These securities may be issued from time to time at our discretion based on our needs and market conditions, including as necessary to balance our use of incremental debt capital.

In March 2012, we issued 5,200,000 shares of our Series E Preferred Stock.  The shares were issued at a price of $25.00 per share, resulting in net proceeds of approximately $124.9 million (after deducting underwriters’ discounts and other offering costs).

We hold interests, together with certain third parties, in companies that we consolidate in our financial statements. These third parties may contribute equity into these entities primarily related to their share of funds for construction and financing-related activities.

Exposure to environmental liabilities

In connection with the acquisition of all of our properties, we have obtained Phase I environmental assessments to ascertain the existence of any environmental liabilities or other issues.  The Phase I environmental assessments of our properties have not revealed any environmental liabilities that we believe would have a material adverse effect on our financial condition or results of operations taken as a whole, nor are we aware of any material environmental liabilities that have occurred since the Phase I environmental assessments were completed.  In addition, we carry a policy of pollution legal liability insurance covering exposure to certain environmental losses at substantially all of our properties.

Inflation

As of March 31, 2012, approximately 95% of our leases (on a rentable square footage basis) were triple net leases, requiring tenants to pay substantially all real estate taxes, insurance, utilities, common area expenses, and other operating expenses (including increases thereto) in addition to base rent. Approximately 94% of our leases (on a rentable square footage basis) contained effective annual rent escalations that were either fixed (generally ranging from 3.0% to 3.5%) or indexed based on a consumer price index or another index. Accordingly, we do not believe that our cash flow or earnings from real estate operations are subject to any significant risk from inflation. An increase in inflation, however, could result in an increase in the cost of our variable rate borrowings, including borrowings related to our unsecured senior line of credit and unsecured senior bank term loans.

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Non-GAAP measures

Funds from operations

GAAP basis accounting for real estate assets utilizes historical cost accounting and assumes real estate values diminish over time.  In an effort to overcome the difference between real estate values and historical cost accounting for real estate assets, the Board of Governors of the National Association of Real Estate Investment Trusts (“NAREIT”) established the measurement tool of FFO.  Since its introduction, FFO has become a widely used non-GAAP financial measure among REITs.  We believe that FFO is helpful to investors as an additional measure of the performance of an equity REIT.  We compute FFO in accordance with standards established by the Board of Governors of NAREIT in its April 2002 White Paper and related implementation guidance, which may differ from the methodology for calculating FFO utilized by other equity REITs, and, accordingly, may not be comparable to such other equity REITs.  The White Paper defines FFO as net income (computed in accordance with GAAP), excluding gains from sales and real estate impairment losses, plus real estate related depreciation and amortization, and after adjustments for unconsolidated partnerships and joint ventures.  The primary reconciling item between GAAP net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders and FFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders is depreciation and amortization expense. Our FFO may differ from the methodology for calculating FFO utilized by other equity REITs, and, accordingly, may not be comparable to such other equity REITs.  FFO should not be considered as an alternative to net income (determined in accordance with GAAP) as an indication of financial performance, or to cash flows from operating activities (determined in accordance with GAAP) as a measure of liquidity, nor is it indicative of funds available to fund our cash needs, including our ability to make distributions.

The following table presents a reconciliation of net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders, the GAAP financial measure most directly comparable to FFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders for the three months ended March 31, 2012 and 2011 (in thousands):

Three Months Ended
March 31,

2012

2011

Net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

18,368

$

24,365

Add:

Depreciation and amortization (1)

43,405

36,707

Net income attributable to noncontrolling interests

711

929

Net income attributable to unvested restricted stock awards

235

242

Subtract:

Gain on sale of land parcel

(1,864

)

FFO attributable to noncontrolling interests

(684

)

(1,065

)

FFO attributable to unvested restricted stock awards

(472

)

(547

)

FFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – basic

59,699

60,631

Effect of assumed conversion and dilutive securities:

Assumed conversion of 8.00% Unsecured Senior Convertible Notes

5

5

FFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – diluted

$

59,704

$

60,636

(1)

Includes depreciation and amortization classified in discontinued operations related to assets “held for sale” (for the periods prior to when such assets were designated as “held for sale”).

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Adjusted funds from operations (“AFFO”)

AFFO is a non-GAAP financial measure that management uses as a supplemental measure of our performance. We compute AFFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders by adding to or deducting from FFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders (1) non-incremental revenue generating capital expenditures, tenant improvements, and leasing commissions (excludes redevelopment expenditures); (2) capitalized income from development projects; (3) gains or losses on early extinguishment of debt; (4) amortization of loan fees, debt premiums/discounts and acquired above and below market leases; (5) effects of straight-line rent and straight-line rent on ground leases; (6) preferred stock redemption charges; and (7) non-cash compensation expense related to restricted stock awards.

We believe that AFFO is a useful supplemental performance measure because it further adjusts FFO to: (1) deduct certain expenditures that, although capitalized and included in depreciation expense, do not enhance the revenue or cash flows of our properties; (2) eliminate the effect of straight-lining our rental income and capitalizing income from development projects in order to reflect the actual amount of contractual rents due in the period presented; and (3) eliminate the effect of non-cash items that are not indicative of our core operations and do not actually reduce the amount of cash generated by our operations. Management believes that adjusting FFO to eliminate the effect of non-cash charges related to stock-based compensation facilitates a comparison of operations across periods and among other equity REITs without the variances caused by different valuation methodologies, the volatility of the expense (which depends on market forces outside management’s control), and the assumptions and the variety of award types that a company can use. Management believes that adjusting FFO provides useful information by excluding certain items that are not representative of our core operating results because they are dependent upon historical costs or subject to judgmental valuation inputs and the timing of management decisions.

AFFO is not intended to represent cash flow for the period, and is intended only to provide an additional measure of performance. We believe that net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders is the most directly comparable GAAP financial measure to AFFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders. Management believes that AFFO is a widely recognized measure of the operations of equity REITs, and presenting AFFO will enable investors to assess the Company’s performance in comparison to other equity REITs. However, other equity REITs may use different methodologies for calculating AFFO and, accordingly, our AFFO may not be comparable to AFFO calculated by other equity REITs. AFFO should not be considered as an alternative to net income (determined in accordance with GAAP) as an indication of financial performance, or to cash flows from operating activities (determined in accordance with GAAP) as a measure of our liquidity, nor is it indicative of funds available to fund our cash needs, including our ability to make distributions.

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The following table presents a reconciliation of net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders, the GAAP financial measure most directly comparable to AFFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders for the three months ended March 31, 2012 and 2011 (in thousands):

Three Months Ended
March 31,

2012

2011

Net income attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

18,368

$

24,365

Cumulative adjustments to calculate FFO (1)

41,331

36,266

FFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders – basic

59,699

60,631

Add/(deduct):

Non-incremental revenue generating capital expenditures

Building improvements

(210

)

(608

)

Tenant improvements and leasing commissions

(2,019

)

(803

)

Amortization of loan fees

2,643

2,278

Amortization of debt premiums/discounts

179

1,335

Amortization of acquired above and below market leases

(800

)

(4,854

)

Deferred rent/straight-line rent

(8,796

)

(6,707

)

Stock compensation

3,293

2,356

Capitalized income from development projects

478

1,428

Deferred rent/straight-line rent on ground leases

1,406

1,241

Loss on early extinguishment of debt

623

2,495

Preferred stock redemption charge

5,978

Allocation to unvested restricted stock awards

(22

)

16

AFFO attributable to Alexandria Real Estate Equities, Inc.’s common stockholders

$

62,452

$

58,808

(1) See reconciling items for FFO presented under “Funds from Operations.”

Adjusted EBITDA and Adjusted EBITDA margin

EBITDA represents earnings before interest, taxes, depreciation, and amortization (“EBITDA”), a non-GAAP financial measure, and is used by management and others as a supplemental measure of performance. Management uses adjusted EBITDA (“Adjusted EBITDA”) to assess the performance of core operations, for financial and operational decision making, and as a supplemental or additional means to evaluate period-to-period comparisons on a consistent basis. Adjusted EBITDA also serves as a proxy for a component of a financial covenant under certain of our debt obligations. Adjusted EBITDA is calculated as EBITDA excluding net stock compensation expense, gains or losses on early extinguishment of debt, gains or losses on sales of land parcels, and impairments. We believe Adjusted EBITDA provides investors relevant and useful information because it permits investors to view income from our operations on an unleveraged basis before the effects of taxes, non-cash depreciation and amortization, net stock compensation expense, gains or losses on early extinguishment of debt, gains or losses on sales of land parcels, and impairments. By excluding interest expense, EBITDA and Adjusted EBITDA allow investors to measure our performance independent of our capital structure and indebtedness and, therefore, allow for a more meaningful comparison of our performance to that of other companies, both in the real estate industry and in other industries. Management believes that excluding non-cash charges related to stock-based compensation facilitates a comparison of our operations across periods and among other equity REITs without the variances caused by different valuation methodologies, the volatility of the expense (which depends on market forces outside of management’s control), and the assumptions and the variety of award types that a company can use. Management believes that adjusting for the effects of gains or losses on early extinguishment of debt, gains or losses on sales of land parcels, and impairments, provides useful information by excluding certain items that are not representative of our core operating results. These items are not related to core operations, are dependent upon historical costs, and are subject to judgmental valuation inputs and the timing of management decisions. EBITDA and Adjusted EBITDA have limitations as measures of our performance. EBITDA and Adjusted EBITDA do not reflect our historical cash expenditures or future cash requirements for capital expenditures or contractual commitments. While EBITDA and Adjusted EBITDA are relevant and widely used measures of performance, they do not represent net income or cash flow from operations as defined by GAAP, and they should not be considered as alternatives to those indicators in evaluating performance or liquidity. Further, our computation of EBITDA and Adjusted EBITDA may not be comparable to similar measures reported by other companies.

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The following table reconciles net income, the most directly comparable financial measure calculated and presented in accordance with GAAP, to EBITDA and Adjusted EBITDA (in thousands):

Three Months Ended
March 31,

2012

2011

Net income

$

32,775

$

32,625

Interest expense – continuing operations

16,227

17,810

Interest expense – discontinued operations

32

Depreciation and amortization – continuing operations

43,405

36,582

Depreciation and amortization – discontinued operations

125

EBITDA

92,407

87,174

Stock compensation expense

3,293

2,356

Gain on sale of land parcel

(1,864

)

Loss (gain) on early extinguishment of debt

623

2,495

Adjusted EBITDA

$

94,459

$

92,025

Fixed charge coverage ratio

The fixed charge coverage ratio is useful to investors as a supplemental measure of the Company’s ability to satisfy fixed financing obligations and dividends on preferred stock. Cash interest is equal to interest expense calculated in accordance with GAAP, plus capitalized interest, less amortization of loan fees, and amortization of debt premiums/discounts.  The fixed charge coverage ratio calculation below is not directly comparable to the computation of “Consolidated Ratio of Earnings to Combined Fixed Charges and Preferred Stock Dividends” included in Exhibit 12.1 to our quarterly report on Form 10-Q, as of March 31, 2012.

The following table presents a reconciliation of interest expense, the most directly comparable GAAP financial measure to cash interest and fixed charges for the three months ended March 31, 2012 and 2011 (dollars in thousands):

Three Months Ended
March 31,

2012

2011

Adjusted EBITDA

$

94,459

$

92,025

Interest expense – continuing operations

16,227

17,810

Interest expense – discontinued operations

32

Add: capitalized interest

15,266

13,193

Less: amortization of loan fees

(2,643

)

(2,278

)

Less: amortization of debt premium/discounts

(179

)

(1,335

)

Cash interest

28,671

27,422

Dividends on preferred stock

7,483

7,089

Fixed charges

$

36,154

$

34,511

Fixed charge coverage ratio

2.6x

2.7x

Interest coverage ratio

Interest coverage ratio is the ratio of Adjusted EBITDA to cash interest. This ratio is useful to investors as an indicator of our ability to service our cash interest obligations.

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The following table summarizes the calculation of the interest coverage ratio for the three months ended March 31, 2012 and 2011 (dollars in thousands):

Three Months Ended
March 31,

2012

2011

Adjusted EBITDA

$

94,459

$

92,025

Interest expense – continuing operations

16,227

17,810

Interest expense – discontinued operations

32

Add: capitalized interest

15,266

13,193

Less: amortization of loan fees

(2,643

)

(2,278

)

Less: amortization of debt premium/discounts

(179

)

(1,335

)

Cash interest

$

28,671

$

27,422

Interest coverage ratio

3.3x

3.4x

Net debt to adjusted EBITDA

Net debt to Adjusted EBITDA is a non-GAAP financial measure that we believe is useful to investors as a supplemental measure in evaluating our leverage.  Net debt is equal to the sum of total debt less cash, cash equivalents, and restricted cash.  See “Adjusted EBITDA” for further information on the calculation of Adjusted EBITDA.

The following table summarizes the calculation of net debt to Adjusted EBITDA as of March 31, 2012 and December 31, 2011 (dollars in thousands):

March 31,

December 31,

2012

2011

Adjusted EBITDA (trailing 12 months)

$

378,484

$

376,050

Secured notes payable

721,715

724,305

Unsecured senior notes payable

549,536

Unsecured senior line of credit

167,000

370,000

Unsecured senior bank term loans

1,350,000

1,600,000

Unsecured senior convertible notes

1,236

84,959

Less: cash and cash equivalents

(77,361

)

(78,539

)

Less: restricted cash

(39,803

)

(23,332

)

Net debt

$

2,672,323

$

2,677,393

Net debt to Adjusted EBITDA

7.1x

7.1x

Net debt to gross assets (excluding cash and restricted cash)

Net debt to gross assets (excluding cash and restricted cash) is a non-GAAP financial measure that we believe is useful to investors as a supplemental measure in evaluating our leverage.  Net debt is calculated as described in “Net debt to adjusted EBITDA.”  Gross assets (excluding cash and restricted cash) are equal to total assets plus accumulated depreciation, less cash, cash equivalents, and restricted cash.

The following table summarizes the calculation of net debt to gross assets (excluding cash and restricted cash) as of March 31, 2012 and December 31, 2011 (dollars in thousands):

March 31,

December 31,

2012

2011

Net debt

$

2,672,323

$

2,677,393

Total assets

6,718,091

6,574,129

Add: accumulated depreciation

779,177

742,535

Less: cash and cash equivalents

(77,361

)

(78,539

)

Less: restricted cash

(39,803

)

(23,332

)

Gross assets (excluding cash and restricted cash)

$

7,380,104

$

7,214,793

Net debt to gross assets (excluding cash and restricted cash)

36%

37%

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Net operating income

See discussion of net operating income and reconciliation of net operating income to income from continuing operations in “Results of Operations.”

Same property net operating income

See discussion of Same Properties and reconciliation of net operating income to income from continuing operations in “Results of Operations.”

Unencumbered net operating income as a percentage of total net operating income

Unencumbered net operating income as a percentage of total net operating income is a non-GAAP financial measure that we believe is useful to investors as a performance measure of our results of operations related to our unencumbered real estate assets, as it reflects only those income and expense items that are incurred at the unencumbered property level. Management uses unencumbered net operating income as a percentage of total net operating income in order to assess its compliance with its financial covenants under our debt obligations because the measure serves as a proxy for a financial measure under certain of our debt obligations. Unencumbered net operating income represents net operating income derived from assets that are not subject to any mortgage, deed of trust, lien, or other security interest.  See the reconciliation of net operating income to income from continuing operations in “Results of Operations.”

The following table summarizes unencumbered net operating income as a percentage of total net operating income for the three months ended March 31, 2012 and 2011 (dollars in thousands):

Three Months Ended
March 31,

2012

2011

Unencumbered net operating income

$

73,037

$

64,320

Encumbered net operating income

28,519

34,539

Total net operating income

$

101,556

$

98,859

Unencumbered net operating income as a percentage of total net operating income

72%

65%

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Item 3.  QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK

Market risk is the exposure to loss resulting from changes in interest rates, equity prices, and foreign currency exchange rates.

Interest rate risk

The primary market risk to which we believe we are exposed is interest rate risk, which may result from many factors, including government monetary and tax policies, domestic and international economic and political considerations, and other factors that are beyond our control.

In order to modify and manage the interest rate characteristics of our outstanding debt and to limit the effects of interest rate risks on our operations, we may utilize a variety of financial instruments, including interest rate swap agreements, caps, floors, and other interest rate exchange contracts.  The use of these types of instruments to hedge a portion of our exposure to changes in interest rates carries additional risks, such as counterparty credit risk and the legal enforceability of hedging contracts.

Our future earnings and fair values relating to financial instruments are primarily dependent upon prevalent market rates of interest, such as LIBOR.  However, our interest rate swap agreements are intended to reduce the effects of interest rate changes.  Based on interest rates at, and our interest rate swap agreements in effect on, March 31, 2012, we estimate that a 1% increase in interest rates on our variable rate debt, including our unsecured senior line of credit and unsecured term loans, after considering the effect of our interest rate swap agreements, would decrease annual future earnings by approximately $1.4 million.  We further estimate that a 1% decrease in interest rates on our variable rate debt, including our unsecured senior line of credit and unsecured term loans, after considering the effect of our interest rate swap agreements in effect on March 31, 2012, would increase annual future earnings by approximately $0.3 million.  A 1% increase in interest rates on our secured debt, unsecured senior notes payable, unsecured senior convertible notes, and interest rate swap agreements would decrease their aggregate fair values by approximately $54.0 million at March 31, 2012.  A 1% decrease in interest rates on our secured debt, unsecured senior notes payable, unsecured senior convertible notes, and interest rate swap agreements would increase their aggregate fair values by approximately $37.5 million at March 31, 2012.

These amounts are determined by considering the impact of the hypothetical interest rates on our borrowing cost and our interest rate swap agreements in effect on March 31, 2012.  These analyses do not consider the effects of the reduced level of overall economic activity that could exist in such an environment.  Further, in the event of a change of such magnitude, we would consider taking actions to further mitigate our exposure to the change.  However, because of the uncertainty of the specific actions that would be taken and their possible effects, the sensitivity analysis assumes no changes in our capital structure.

Equity price risk

We have exposure to equity price market risk because of our equity investments in certain publicly traded companies and privately held entities.  We classify investments in publicly traded companies as “available for sale” and, consequently, record them on our condensed consolidated balance sheets at fair value, with unrealized gains or losses reported as a component of accumulated other comprehensive income or loss.  Investments in privately held entities are generally accounted for under the cost method because we do not influence any of the operating or financial policies of the entities in which we invest.  For all investments, we recognize other-than-temporary declines in value against earnings in the same period during which the decline in value was deemed to have occurred.  There is no assurance that future declines in value will not have a material adverse impact on our future results of operations.  By way of example, a 10% decrease in the fair value of our equity investments as of March 31, 2012, would decrease their fair value by approximately $9.8 million.

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Foreign currency exchange rate risk

We have exposure to foreign currency exchange rate risk related to our subsidiaries operating in Canada and Asia.  The functional currencies of our foreign subsidiaries are the respective local currencies.  Gains or losses resulting from the translation of our foreign subsidiaries’ balance sheets and statements of income are included in accumulated other comprehensive income as a separate component of total equity.  Gains or losses will be reflected in our statements of income when there is a sale or partial sale of our investment in these operations or upon a complete or substantially complete liquidation of the investment.  Based on our current operating assets outside the United States as of March 31, 2012, we estimate that a 10% increase in foreign currency rates relative to the United States dollar would increase annual future earnings by approximately $0.1 million.  We further estimate that a 10% decrease in foreign currency rates relative to the United States dollar would decrease annual future earnings by approximately $0.1 million.  This sensitivity analysis assumes a parallel shift of all foreign currency exchange rates with respect to the United States dollar; however, foreign currency exchange rates do not typically move in such a manner and actual results may differ materially.

Item 4. CONTROLS AND PROCEDURES

Evaluation of disclosure controls and procedures

As of March 31, 2012, we performed an evaluation, under the supervision of our Chief Executive Officer (“CEO”) and Chief Financial Officer (“CFO”), of the effectiveness of the design and operation of our disclosure controls and procedures.  These controls and procedures have been designed to ensure that information required for disclosure is recorded, processed, summarized, and reported within the requisite time periods. Based on our evaluation, the CEO and CFO concluded that our disclosure controls and procedures were effective as of March 31, 2012.

Changes in internal control over financial reporting

There has not been any change in our internal control over financial reporting during the three months ended March 31, 2012, that has materially affected, or is reasonably likely to materially affect, our internal control over financial reporting.

PART II OTHER INFORMATION

Item 1A. RISK FACTORS

In addition to the information set forth in this quarterly report on Form 10-Q, one should also carefully review and consider the information contained in our other reports and periodic filings that we make with the SEC, including, without limitation, the information contained under the caption “Item 1A. Risk Factors” in our annual report on Form 10-K for the year ended December 31, 2011.  Those risk factors could materially affect our business, financial condition, and results of operations. The risks that we describe in our public filings are not the only risks that we face. Additional risks and uncertainties not currently known to us, or that we presently deem to be immaterial, also may materially adversely affect our business, financial condition, and results of operations.

Item 5.    OTHER INFOR MATION

The information included in this Part II, Item 5 is provided in accordance with Form 8-K, Item 1.01, Entry into a Material Definitive Agreement, and Item 2.03, Creation of a Direct Financial Obligation or an Obligation under an Off-Balance Sheet Arrangement of Registrant .

Third Amended and Restated Credit Agreement

On April 30, 2012 (the “Effective Date”), the Company entered into a Third Amended and Restated Credit Agreement (the “Amended Credit Agreement”), which amends and restates the Company’s Second Amended and Restated Credit Agreement dated October 31, 2006, as further amended December 1, 2006, May 2, 2007, and January 28, 2011.  Merrill Lynch, Pierce, Fenner & Smith Incorporated, J.P. Morgan Securities LLC, and Citigroup Global Markets Inc. serve as Joint Lead Arrangers, and Bank of America, N.A. serves as Administrative Agent.

The Amended Credit Agreement provides for, among other things, a $1.5 billion unsecured senior revolving credit facility (the “Revolving Credit Facility”) and an accordion option to increase the Amended Credit Agreement by up to an additional $500 million.  Borrowings under the Revolving Credit Facility bear interest at LIBOR or the specified base rate, plus in either case a margin specified in the Amended Credit Agreement (the “Applicable Margin”).  The Applicable Margin for the Company’s LIBOR borrowings under the Revolving Credit Facility decreased to 1.20% as of the Effective Date from 2.40% immediately prior to this amendment.  The Amended Credit Agreement removes the Company’s operating partnership, Alexandria Real Estate Equities, L.P. (the “Operating Partnership”), as a borrower and adds the Operating Partnership as a guarantor thereunder.

The maturity date for the Revolving Credit Facility has been extended to April 30, 2017, provided that the Company exercises its rights to extend the maturity date twice by an additional six months for each exercise.  The Amended Credit Agreement also modifies certain financial covenants with respect to the Revolving Credit Facility, including the secured debt ratio, leverage ratio, unsecured leverage ratio, and unsecured interest coverage ratio, and removes the occupancy and unsecured debt yield covenants.

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Under the Amended Credit Agreement, the Company must not, as of the last day of any fiscal quarter, permit its:

· leverage ratio to exceed 60.0%, except for four calculation dates immediately following any acquisition in which the assets acquired exceed 5% of the Company’s total assets (a “Material Acquisition”), in which case its leverage ratio is not to exceed 65.0%

· unsecured leverage ratio to exceed 60.0%, except for four calculation dates immediately following any Material Acquisition, in which case its unsecured leverage ratio is not to exceed 65.0%

· unsecured interest coverage ratio to be less than 1.75 to 1.00

· secured debt ratio to exceed 40.0%, except for four calculation dates immediately following any Material Acquisition, in which case its secured debt ratio is not to exceed 45.0%

· fixed charge coverage ratio to be less than 1.50 to 1.00

· minimum book value to be less than the sum of $2.0 billion and 50% of the net proceeds of equity offerings after January 28, 2011

Amendments to Term Loan Agreement and Amended and Restated Term Loan Agreement

On April 30, 2012, the Company entered into amendments (the “Term Loan Amendments”) to the Company’s Term Loan Agreement dated December 6, 2011 (the “2017 Unsecured Senior Bank Term Loan”) and Amended and Restated Term Loan Agreement dated June 30, 2011 (the “2016 Unsecured Senior Bank Term Loan,” together with the 2017 Unsecured Senior Bank Term Loan, the “Term Loan Agreements”).  The Term Loan Amendments remove the Operating Partnership as a borrower under each of the Term Loan Agreements and add the Operating Partnership as a guarantor thereunder.  The Term Loan Amendments modify certain financial covenants to conform to those contained in the Amended Credit Agreement as described above.

J.P. Morgan Securities LLC, Merrill Lynch, Pierce, Fenner & Smith Incorporated and Citigroup Global Markets Inc. serve as Joint Lead Arrangers, and Bank of America, N.A. serves as Administrative Agent under the 2017 Unsecured Senior Bank Term Loan.

Citigroup Global Markets Inc., RBC Capital Markets and RBS Securities Inc. serve as Joint Lead Arrangers, and Citibank, N.A. serves as Administrative Agent under the 2016 Unsecured Senior Bank Term Loan.

Affiliates of lenders under the Amended Credit Agreement and the Term Loan Amendments have, from time to time, performed, and may in the future perform, various financial advisory, investment banking and general financing services for the Company.

The foregoing summary of the Amended Credit Agreement and the Term Loan Agreements does not purport to be complete and is qualified in its entirety by reference to the full text of the Amended Credit Agreement and the Term Loan Amendments, copies of which will be filed as exhibits to the Company’s Quarterly Report on Form 10-Q for the quarter ending June 30, 2012.

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Item 6. EXHIBITS

3.1*

Articles of Amendment and Restatement of the Company, filed as an exhibit to the Company’s quarterly report on Form 10-Q filed with the SEC on August 14, 1997.

3.2*

Certificate of Correction of the Company, filed as an exhibit to the Company’s quarterly report on Form 10-Q filed with the SEC on August 14, 1997.

3.3*

Bylaws of the Company (as amended December 15, 2011), filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on December 19, 2011.

3.4*

Articles Supplementary, dated June 9, 1999, relating to the 9.50% Series A Cumulative Redeemable Preferred Stock, filed as an exhibit to the Company’s quarterly report on Form 10-Q filed with the SEC on August 13, 1999.

3.5*

Articles Supplementary, dated February 10, 2000, relating to the election to be subject to Subtitle 8 of Title 3 of the Maryland General Corporation Law, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on February 10, 2000.

3.6*

Articles Supplementary, dated February 10, 2000, relating to the Series A Junior Participating Preferred Stock, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on February 10, 2000.

3.7*

Articles Supplementary, dated January 18, 2002, relating to the 9.10% Series B Cumulative Redeemable Preferred Stock, filed as an exhibit to the Company’s Form 8-A for registration of certain classes of securities filed with the SEC on January 18, 2002.

3.8*

Articles Supplementary, dated June 22, 2004, relating to the 8.375% Series C Cumulative Redeemable Preferred Stock, filed as an exhibit to the Company’s Form 8-A for registration of certain classes of securities filed with the SEC on June 28, 2004.

3.9*

Articles Supplementary, dated March 25, 2008, relating to the 7.00% Series D Cumulative Convertible Preferred Stock, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on March 25, 2008.

3.10*

Articles Supplementary, dated March 12, 2012, relating to the 6.45% Series E Cumulative Redeemable Preferred Stock, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on March 14, 2012.

4.1*

Specimen certificate representing shares of Common Stock, filed as an exhibit to the Company’s quarterly report on Form 10-Q filed with the SEC on May 5, 2011.

4.2*

Specimen certificate representing shares of 8.375% Series C Cumulative Redeemable Preferred Stock, filed as an exhibit to the Company’s Form 8-A for registration of certain classes of securities filed with the SEC on June 28, 2004.

4.3*

Specimen certificate representing shares of 7.00% Series D Cumulative Convertible Preferred Stock, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on March 25, 2008.

4.4*

Indenture, dated January 17, 2007, among the Company, Alexandria Real Estate Equities, L.P., as Guarantor, and Wilmington Trust Company, as Trustee, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on January 19, 2007.

4.5*

Registration Rights Agreement, dated as of January 17, 2007, among the Company, Alexandria Real Estate Equities, L.P., UBS Securities LLC, Citigroup Global Markets, Inc., and Merrill Lynch, Pierce, Fenner & Smith Incorporated, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on January 18, 2007.

4.6*

Indenture, dated as of April 27, 2009, among the Company, as Issuer, Alexandria Real Estate Equities, L.P., as Guarantor, and Wilmington Trust Company, as Trustee, filed as an exhibit to the Company’s quarterly report on Form 10-Q filed with the SEC on August 10, 2009.

4.7*

Indenture, dated as of February 29, 2012, among the Company, as Issuer, Alexandria Real Estate Equities, L.P., as Guarantor, and The Bank of New York Mellon Trust Company, N.A., as Trustee, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on February 29, 2012.

4.8*

Supplemental Indenture No. 1, dated as of February 29, 2012, among the Company, as Issuer, Alexandria Real Estate Equities, L.P., as Guarantor, and The Bank of New York Mellon Trust Company, N.A., as Trustee, filed as an exhibit to the Company’s current report on Form 8-K filed with the SEC on February 29, 2012.

4.9*

Form of 4.60% Senior Note due 2022 (included in Exhibit 4.7 above)

4.10*

Specimen certificate representing shares of 6.45% Series E Cumulative Redeemable Preferred Stock, filed as an exhibit to the Company’s Form 8-A for registration of certain classes of securities filed with the SEC on March 12, 2012.

10.1

Amended and Restated Executive Employment Agreement, effective as of April 26, 2012, by and between the Company and Joel S. Marcus.

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11.1

Statement of Computation of Per Share Earnings (included in Note 8 to the Condensed Consolidated Financial Statements).

12.1

Statement of Computation of Ratios.

31.1

Certification of Chief Executive Officer Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.

31.2

Certification of Chief Financial Officer Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.

32.0

Certification of Chief Executive Officer and Chief Financial Officer Pursuant to 18 U.S.C. Section 1350, as Adopted Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.

101

The following materials from the Company’s quarterly report on Form 10-Q for the three months ended March 31, 2012, formatted in XBRL (eXtensible Business Reporting Language): (i) Condensed Consolidated Balance Sheets as of March 31, 2012 and December 31, 2011 (unaudited), (ii) Condensed Consolidated Statements of Income for the three months ended March 31, 2012 and 2011 (unaudited), (iii) Condensed Consolidated Statements of Comprehensive Income for the three months ended March 31, 2012 and 2011 (unaudited), (iv) Condensed Consolidated Statement of Changes in Stockholders’ Equity and Noncontrolling Interests for the three months ended March 31, 2012 (unaudited), (v) Condensed Consolidated Statements of Cash Flows for the three months ended March 31, 2012 and 2011 (unaudited), and (vi) Notes to Condensed Consolidated Financial Statements (unaudited).


(*) Incorporated by reference.

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SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized, on May 4, 2012.

ALEXANDRIA REAL ESTATE EQUITIES, INC.

/s/ Joel S. Marcus

Joel S. Marcus

Chairman/Chief Executive Officer

(Principal Executive Officer)

/s/ Dean A. Shigenaga

Dean A. Shigenaga

Chief Financial Officer

(Principal Financial and Chief Accounting Officer)

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