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þ
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ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
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o
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TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
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For the transition period from to .
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Delaware
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33-0804655
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(State or other jurisdiction of
incorporation or organization)
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(I.R.S. Employer
Identification No.)
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5200 Illumina Way
San Diego, California
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92122
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(Address of principal executive offices)
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(Zip Code)
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Title of each class
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Name of each exchange on which registered
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Common Stock, $0.01 par value
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The NASDAQ Global Select Market
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Large accelerated filer
þ
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Accelerated filer
o
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Non-accelerated filer
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Smaller reporting company
o
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(Do not check if a smaller reporting company)
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Page
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•
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statements concerning our expectations as to our future financial performance, results of operations, or other operational results or metrics;
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•
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statements concerning the benefits that we expect will result from our business activities and certain transactions we have completed, such as product introductions, increased revenue, decreased expenses, and avoided expenses and expenditures; and
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•
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statements of our expectations, beliefs, future plans and strategies, anticipated developments (including new products and services), and other matters that are not historical facts.
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our ability to maintain our revenue levels and profitability during periods of research funding reduction or uncertainty and adverse economic and business conditions, including as a result of slowing or uncertain economic growth in the United States or worldwide;
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•
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our ability to further develop and commercialize our instruments and consumables and to deploy new products, services, and applications, and expand the markets, for our technology platforms;
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•
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our ability to manufacture robust instrumentation and consumables;
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•
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our ability to successfully identify and integrate acquired technologies, products, or businesses;
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•
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our expectations and beliefs regarding future prospects and growth of the business and the markets in which we operate;
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•
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the assumptions underlying our critical accounting policies and estimates;
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•
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our assessments and estimates that determine our effective tax rate;
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our assessments and beliefs regarding the future outcome of pending legal proceedings and the liability, if any, that we may incur as a result of those proceedings; and
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other factors detailed in our filings with the SEC, including the risks, uncertainties, and assumptions described in Item 1A “Risk Factors” below, or in information disclosed in public conference calls, the date and time of which are released beforehand.
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ITEM 1A.
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Risk Factors
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•
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availability, quality, and price relative to competing products and services;
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•
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the functionality and performance of new and existing products and services;
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•
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the timing of introduction of new products or services relative to competing products and services;
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scientists’ and customers’ opinions of the utility of new products or services;
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citation of new products or services in published research;
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regulatory trends and approvals; and
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•
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general trends in life sciences research and applied markets.
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•
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difficulties in integrating new operations, technologies, products, and personnel;
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•
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lack of synergies or the inability to realize expected synergies and cost-savings;
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•
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difficulties in managing geographically dispersed operations;
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•
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underperformance of any acquired technology, product, or business relative to our expectations and the price we paid;
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•
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negative near-term impacts on financial results after an acquisition, including acquisition-related earnings charges;
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•
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the potential loss of key employees, customers, and strategic partners of acquired companies;
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•
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claims by terminated employees and shareholders of acquired companies or other third parties related to the transaction;
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•
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the issuance of dilutive securities, assumption or incurrence of additional debt obligations or expenses, or use of substantial portions of our cash;
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diversion of management’s attention and company resources from existing operations of the business;
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•
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inconsistencies in standards, controls, procedures, and policies;
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•
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the impairment of intangible assets as a result of technological advancements, or worse-than-expected performance of acquired companies; and
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assumption of, or exposure to, unknown contingent liabilities or liabilities that are difficult to identify or accurately quantify.
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•
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decreased demand for our products;
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•
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injury to our reputation;
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•
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increased product liability insurance costs;
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•
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costs of related litigation; and
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•
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substantial monetary awards to plaintiffs.
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not experimental or investigational,
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medically necessary,
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appropriate for the specific patient,
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cost-effective,
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•
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supported by peer-reviewed publications, and
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included in clinical practice guidelines
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•
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disputes among payors as to which party is responsible for payment;
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•
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disparity in coverage among various payors;
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disparity in information and billing requirements among payors; and
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incorrect or missing billing information, which is required to be provided by the prescribing physician.
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longer payment cycles and difficulties in collecting accounts receivable outside of the United States;
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longer sales cycles due to the volume of transactions taking place through public tenders;
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currency exchange fluctuations;
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•
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challenges in staffing and managing foreign operations;
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•
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tariffs and other trade barriers;
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•
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unexpected changes in legislative or regulatory requirements of foreign countries into which we sell our products;
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•
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difficulties in obtaining export licenses or in overcoming other trade barriers and restrictions resulting in delivery delays; and
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•
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significant taxes or other burdens of complying with a variety of foreign laws.
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ITEM 1B.
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Unresolved Staff Comments.
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ITEM 2.
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Properties.
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Approximate
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Lease
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Location
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Square Feet
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Operation
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Expiration Dates
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San Diego, CA
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557,000
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R&D, Manufacturing, Warehouse, Distribution, and Administrative
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2015 – 2031
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San Francisco Bay Area, CA*
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161,000
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R&D, Manufacturing, and Administrative
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2014 – 2018
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Singapore
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104,000
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R&D, Manufacturing, and Administrative
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2015 – 2016
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Cambridge, United Kingdom
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66,000
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R&D and Administrative
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2021 - 2024
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Eindhoven, the Netherlands
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42,000
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Distribution and Administrative
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2015
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Madison, WI
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27,000
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R&D, Manufacturing, and Administrative
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2018
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Morrisville, NC
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23,000
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R&D, Manufacturing
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2016
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Other
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30,000
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R&D, Manufacturing, and Administrative
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2014 - 2016
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ITEM 3.
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Legal Proceedings.
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ITEM 4.
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Mine Safety Disclosures.
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ITEM 5.
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Market for Registrant’s Common Equity, Related Stockholder Matters and Issuer Purchases of Equity Securities.
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2013
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2012
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||||||||||||
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High
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Low
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High
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Low
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||||||||
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First Quarter
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$
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56.58
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$
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48.00
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$
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55.39
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$
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28.72
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Second Quarter
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$
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77.11
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$
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53.77
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$
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53.00
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$
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37.77
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Third Quarter
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$
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85.81
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$
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72.13
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$
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49.27
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$
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38.92
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Fourth Quarter
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$
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110.54
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$
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72.77
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$
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57.00
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$
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44.78
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ITEM 6.
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Selected Financial Data.
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Years Ended
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||||||||||||||||||
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December 29,
2013
(52 weeks)
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December 30,
2012
(52 weeks)
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January 1,
2012
(52 weeks) |
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January 2,
2011
(52 weeks) |
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January 3,
2010
(53 weeks) |
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(In thousands, except per share data)
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Total revenue
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$
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1,421,178
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$
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1,148,516
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$
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1,055,535
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$
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902,741
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$
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666,324
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Income from operations
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$
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134,107
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$
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200,752
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$
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199,461
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$
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211,654
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$
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125,597
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Net income
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$
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125,308
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$
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151,254
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$
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86,628
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$
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124,891
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$
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72,281
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Net income per share:
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||||||
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Basic
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$
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1.00
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$
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1.23
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$
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0.70
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$
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1.01
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$
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0.59
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Diluted
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$
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0.90
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$
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1.13
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$
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0.62
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$
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0.87
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$
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0.53
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Shares used in calculating net income per share:
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|||||
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Basic
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125,076
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122,999
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123,399
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123,581
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123,154
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Diluted
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139,936
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133,693
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138,937
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143,433
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137,096
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|||||
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December 29,
2013 |
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December 30,
2012 |
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January 1,
2012 |
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January 2,
2011 |
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January 3,
2010 |
||||||||||
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(In thousands)
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Cash, cash equivalents and short-term investments(1),(2)
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$
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1,165,603
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$
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1,350,204
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$
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1,189,568
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$
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894,289
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$
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693,527
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Working capital
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$
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1,295,472
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$
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1,482,477
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$
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1,317,698
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$
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723,881
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$
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540,354
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Total assets
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$
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3,019,006
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$
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2,566,085
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$
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2,195,840
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$
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1,839,113
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$
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1,429,937
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Long-term debt, current portion(1)
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$
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29,288
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$
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36,967
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—
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$
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311,609
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$
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290,202
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Long-term debt, less current portion(1)
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$
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839,305
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$
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805,406
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$
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807,369
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|
—
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—
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||
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Total stockholders’ equity(2)
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$
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1,533,202
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$
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1,318,581
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|
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$
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1,075,215
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$
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1,197,675
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|
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$
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864,248
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|
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(1)
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During 2011, we issued
$920.0 million
principal amount of
0.25%
Convertible Senior Notes due 2016, which was classified as long-term liability as of
December 29, 2013
and
December 30, 2012
. In February 2007, we issued
$400.0 million
principal amount of
0.625%
Convertible Senior Notes due 2014. Due to the
0.625%
Convertible Senior Notes due 2014 being convertible during the fiscal years ended
December 29, 2013
,
December 30, 2012
,
January 2, 2011
, and
January 3, 2010
, we classified the outstanding principal amount of these notes as current in our consolidated balance sheet in the respective periods. As of
January 1, 2012
, the outstanding principal amount of the
0.625%
Convertible Senior Notes was not convertible and was therefore reclassified to long-term liability. See note “6. Convertible Senior Notes” in Part II, Item 8, Notes to Consolidated Financial Statements, for further information.
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(2)
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For the fiscal years ended
December 29, 2013
,
December 30, 2012
,
January 1, 2012
,
January 2, 2011
, and
January 3, 2010
, we repurchased
0.9 million
,
1.9 million
,
9.2 million
,
0.8 million
, and
6.1 million
shares, respectively, of common stock for
$50.0 million
,
$82.5 million
,
$570.3 million
,
$44.0 million
, and
$175.1 million
, respectively. See note “9. Stockholders’ Equity” in Part II, Item 8, Notes to Consolidated Financial Statements.
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ITEM 7.
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Management’s Discussion and Analysis of Financial Condition and Results of Operations.
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•
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Business Overview and Outlook
. High level discussion of our operating results and significant known trends that affect our business.
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•
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Results of Operations
. Detailed discussion of our revenues and expenses.
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•
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Liquidity and Capital Resources
. Discussion of key aspects of our statements of cash flows, changes in our financial position, and our financial commitments.
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•
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Off-Balance Sheet Arrangements
. We have no significant off-balance sheet arrangements.
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•
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Contractual Obligations.
Tabular disclosure of known contractual obligations as of
December 29, 2013
.
|
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•
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Critical Accounting Policies and Estimates
. Discussion of significant changes since our most recent Annual Report on Form 10-K that we believe are important to understanding the assumptions and judgments underlying our financial statements.
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•
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Net revenue
increased
by
24%
in
2013
compared to
2012
. Our sales increased across our portfolio of sequencing products, including consumables, instruments, and services.
|
|
•
|
Gross profit as a percentage of revenue (gross margin) was
64.2%
in
2013
,
a decrease
from
67.4%
in
2012
. Gross margin decreased in
2013
due in large part to an impairment charge associated with the discontinuation of the Eco and NuPCR product lines, higher amortization of acquired intangible assets, and legal contingencies associated with the Syntrix litigation matter. See note “10. Legal Proceedings” in Part II, Item 8 of this Form 10-K. We believe our gross margin in future periods will depend on several factors, including: market conditions that may impact our pricing power; sales mix changes among consumable, instrument, and services; product mix changes between established products and new products in new markets; our cost structure for manufacturing operations; royalties; and our ability to create innovative and high premium products that meet or stimulate customer demand.
|
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•
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Income from operations
decreased
by
$66.6 million
in
2013
compared to
2012
. This was a result of higher operating expenses offsetting the increase in gross profit. During the current period, we recorded a
$115.4 million
legal contingency expense in operating expenses associated primarily with the Syntrix patent litigation matter. Additionally, our research and development expenses and selling, general and administrative expenses increased from the prior year by
$45.7 million
and
$95.0 million
, respectively, and we expect such expenses to continue to grow as we continue to invest in the growth of our business.
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|
•
|
Our effective tax rate was
21.3%
in
2013
, as compared to
32.1%
in
2012
. The variance from the U.S. federal statutory tax rate of 35% in 2013 was primarily attributable to a higher mix of foreign earnings taxed at rates lower than the U.S. federal statutory tax rate and the retroactive reinstatement of the federal research and development credit for 2012 which was enacted in January 2013. These items offset the impact of recording a valuation allowance which was primarily related to the estimated limitation on utilizing foreign tax credits in the U.S. Our future effective tax rate may vary from the U.S. federal statutory tax rate due to the mix of earnings in tax jurisdictions with different statutory tax rates and the other factors discussed in the risk factor “We are subject to risks related to taxation in multiple jurisdictions” in Part I Item 1A of this Form 10-K for the fiscal year ended
December 29, 2013
. We anticipate that our effective tax rate will trend lower than the U.S. federal statutory tax rate in the future due to the portion of our earnings that will be subject to lower statutory tax rates.
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•
|
We ended
2013
with cash, cash equivalents, and short-term investments totaling
$1.17 billion
.
|
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|
2013
|
|
2012
|
|
2011
|
|||
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Revenue:
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|
|
|
|
|
|
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|
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Product revenue
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89.0
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%
|
|
91.9
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%
|
|
93.5
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%
|
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Service and other revenue
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11.0
|
|
|
8.1
|
|
|
6.5
|
|
|
Total revenue
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100.0
|
|
|
100.0
|
|
|
100.0
|
|
|
Cost of revenue:
|
|
|
|
|
|
|
|
|
|
Cost of product revenue
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28.7
|
|
|
27.6
|
|
|
29.2
|
|
|
Cost of service and other revenue
|
4.8
|
|
|
3.8
|
|
|
2.5
|
|
|
Amortization of acquired intangible assets
|
2.3
|
|
|
1.2
|
|
|
1.1
|
|
|
Total cost of revenue
|
35.8
|
|
|
32.6
|
|
|
32.8
|
|
|
Gross profit
|
64.2
|
|
|
67.4
|
|
|
67.2
|
|
|
Operating expense:
|
|
|
|
|
|
|
|
|
|
Research and development
|
19.5
|
|
|
20.1
|
|
|
18.7
|
|
|
Selling, general and administrative
|
26.8
|
|
|
24.9
|
|
|
24.8
|
|
|
Legal contingencies
|
8.1
|
|
|
—
|
|
|
—
|
|
|
Unsolicited tender offer related expense
|
1.0
|
|
|
2.0
|
|
|
—
|
|
|
Acquisition related (gain) expense, net
|
(0.8
|
)
|
|
0.2
|
|
|
0.1
|
|
|
Headquarter relocation
|
0.2
|
|
|
2.3
|
|
|
4.0
|
|
|
Restructuring
|
—
|
|
|
0.4
|
|
|
0.8
|
|
|
Total operating expense
|
54.8
|
|
|
49.9
|
|
|
48.4
|
|
|
Income from operations
|
9.4
|
|
|
17.5
|
|
|
18.8
|
|
|
Other income (expense):
|
|
|
|
|
|
|
|
|
|
Interest income
|
0.3
|
|
|
1.4
|
|
|
0.7
|
|
|
Interest expense
|
(2.7
|
)
|
|
(3.3
|
)
|
|
(3.3
|
)
|
|
Cost-method investment related gain, net
|
4.3
|
|
|
4.0
|
|
|
—
|
|
|
Other expense, net
|
(0.1
|
)
|
|
(0.2
|
)
|
|
(3.7
|
)
|
|
Total other income (expense), net
|
1.8
|
|
|
1.9
|
|
|
(6.3
|
)
|
|
Income before income taxes
|
11.2
|
|
|
19.4
|
|
|
12.5
|
|
|
Provision for income taxes
|
2.4
|
|
|
6.2
|
|
|
4.4
|
|
|
Net income
|
8.8
|
%
|
|
13.2
|
%
|
|
8.1
|
%
|
|
|
2013 - 2012
|
|
2012 - 2011
|
||||||||||||||||||||||
|
(Dollars in thousands)
|
2013
|
|
2012
|
|
Change
|
|
% Change
|
|
2011
|
|
Change
|
|
% Change
|
||||||||||||
|
Product revenue
|
$
|
1,264,656
|
|
|
$
|
1,055,826
|
|
|
$
|
208,830
|
|
|
20
|
%
|
|
$
|
987,280
|
|
|
$
|
68,546
|
|
|
7
|
%
|
|
Service and other revenue
|
156,522
|
|
|
92,690
|
|
|
63,832
|
|
|
69
|
|
|
68,255
|
|
|
24,435
|
|
|
36
|
|
|||||
|
Total revenue
|
$
|
1,421,178
|
|
|
$
|
1,148,516
|
|
|
$
|
272,662
|
|
|
24
|
%
|
|
$
|
1,055,535
|
|
|
$
|
92,981
|
|
|
9
|
%
|
|
|
2013 - 2012
|
|
2012 - 2011
|
||||||||||||||||||||||
|
(Dollars in thousands)
|
2013
|
|
2012
|
|
Change
|
|
% Change
|
|
2011
|
|
Change
|
|
% Change
|
||||||||||||
|
Total gross profit
|
$
|
911,887
|
|
|
$
|
773,528
|
|
|
$
|
138,359
|
|
|
18
|
%
|
|
$
|
709,098
|
|
|
$
|
64,430
|
|
|
9
|
%
|
|
Total gross margin
|
64.2
|
%
|
|
67.4
|
%
|
|
|
|
|
|
67.2
|
%
|
|
|
|
|
|||||||||
|
|
2013 - 2012
|
|
2012 - 2011
|
||||||||||||||||||||||
|
(Dollars in thousands)
|
2013
|
|
2012
|
|
Change
|
|
% Change
|
|
2011
|
|
Change
|
|
% Change
|
||||||||||||
|
Research and development
|
$
|
276,743
|
|
|
$
|
231,025
|
|
|
$
|
45,718
|
|
|
20
|
%
|
|
$
|
196,913
|
|
|
$
|
34,112
|
|
|
17
|
%
|
|
Selling, general and administrative
|
381,040
|
|
|
285,991
|
|
|
95,049
|
|
|
33
|
|
|
261,843
|
|
|
24,148
|
|
|
9
|
|
|||||
|
Legal contingencies
|
115,369
|
|
|
—
|
|
|
115,369
|
|
|
100
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|||||
|
Unsolicited tender offer related expense
|
13,621
|
|
|
23,136
|
|
|
(9,515
|
)
|
|
(41
|
)
|
|
—
|
|
|
23,136
|
|
|
100
|
|
|||||
|
Acquisition related (gain) expense, net
|
(11,617
|
)
|
|
2,774
|
|
|
(14,391
|
)
|
|
(519
|
)
|
|
919
|
|
|
1,855
|
|
|
202
|
|
|||||
|
Headquarter relocation
|
2,624
|
|
|
26,328
|
|
|
(23,704
|
)
|
|
(90
|
)
|
|
41,826
|
|
|
(15,498
|
)
|
|
(37
|
)
|
|||||
|
Restructuring
|
—
|
|
|
3,522
|
|
|
(3,522
|
)
|
|
(100
|
)
|
|
8,136
|
|
|
(4,614
|
)
|
|
(57
|
)
|
|||||
|
Total operating expense
|
$
|
777,780
|
|
|
$
|
572,776
|
|
|
$
|
205,004
|
|
|
36
|
%
|
|
$
|
509,637
|
|
|
$
|
63,139
|
|
|
12
|
%
|
|
|
2013 - 2012
|
|
2012 - 2011
|
||||||||||||||||||||||
|
(Dollars in thousands)
|
2013
|
|
2012
|
|
Change
|
|
% Change
|
|
2011
|
|
Change
|
|
% Change
|
||||||||||||
|
Interest income
|
$
|
4,887
|
|
|
$
|
16,208
|
|
|
$
|
(11,321
|
)
|
|
(70
|
)%
|
|
7,052
|
|
|
9,156
|
|
|
130
|
%
|
||
|
Interest expense
|
(39,690
|
)
|
|
(37,779
|
)
|
|
(1,911
|
)
|
|
5
|
|
|
(34,790
|
)
|
|
(2,989
|
)
|
|
9
|
|
|||||
|
Cost-method investment related gain, net
|
61,357
|
|
|
45,911
|
|
|
15,446
|
|
|
34
|
|
|
—
|
|
|
45,911
|
|
|
100
|
|
|||||
|
Other expense, net
|
(1,347
|
)
|
|
(2,484
|
)
|
|
1,137
|
|
|
(46
|
)
|
|
(38,678
|
)
|
|
36,194
|
|
|
(94
|
)
|
|||||
|
Total other income (expense), net
|
$
|
25,207
|
|
|
$
|
21,856
|
|
|
$
|
3,351
|
|
|
15
|
%
|
|
$
|
(66,416
|
)
|
|
$
|
88,272
|
|
|
(133
|
)%
|
|
|
2013 - 2012
|
|
2012 - 2011
|
||||||||||||||||||||||
|
(Dollars in thousands)
|
2013
|
|
2012
|
|
Change
|
|
% Change
|
|
2011
|
|
Change
|
|
% Change
|
||||||||||||
|
Income before income taxes
|
$
|
159,314
|
|
|
$
|
222,608
|
|
|
$
|
(63,294
|
)
|
|
(28
|
)%
|
|
$
|
133,045
|
|
|
$
|
89,563
|
|
|
67
|
%
|
|
Provision for income taxes
|
34,006
|
|
|
71,354
|
|
|
(37,348
|
)
|
|
(52
|
)
|
|
46,417
|
|
|
24,937
|
|
|
54
|
|
|||||
|
Net income
|
$
|
125,308
|
|
|
$
|
151,254
|
|
|
$
|
(25,946
|
)
|
|
(17
|
)%
|
|
$
|
86,628
|
|
|
$
|
64,626
|
|
|
75
|
%
|
|
Effective tax rate
|
21.3
|
%
|
|
32.1
|
%
|
|
|
|
|
|
34.9
|
%
|
|
|
|
|
|||||||||
|
•
|
support of commercialization efforts related to our current and future products, including expansion of our direct sales force and field support resources both in the United States and abroad;
|
|
•
|
acquisitions of equipment and other fixed assets for use in our current and future manufacturing and research and development facilities;
|
|
•
|
repurchases of our outstanding common stock;
|
|
•
|
the continued advancement of research and development efforts;
|
|
•
|
potential strategic acquisitions and investments;
|
|
•
|
repayments of debt obligations; and
|
|
•
|
the expansion needs of our facilities, including costs of leasing additional facilities.
|
|
•
|
our ability to successfully commercialize and further develop our technologies and create innovative products in our markets;
|
|
•
|
scientific progress in our research and development programs and the magnitude of those programs;
|
|
•
|
competing technological and market developments; and
|
|
•
|
the need to enter into collaborations with other companies or acquire other companies or technologies to enhance or complement our product and service offerings.
|
|
(In thousands)
|
2013
|
|
2012
|
|
2011
|
||||||
|
Net cash provided by operating activities
|
$
|
386,421
|
|
|
$
|
291,873
|
|
|
$
|
358,140
|
|
|
Net cash used in investing activities
|
(69,649
|
)
|
|
(150,012
|
)
|
|
(400,999
|
)
|
|||
|
Net cash (used in) provided by financing activities
|
(38,719
|
)
|
|
(10,755
|
)
|
|
97,016
|
|
|||
|
Effect of exchange rate changes on cash and cash equivalents
|
(397
|
)
|
|
(103
|
)
|
|
(126
|
)
|
|||
|
Net increase in cash and cash equivalents
|
$
|
277,656
|
|
|
$
|
131,003
|
|
|
$
|
54,031
|
|
|
|
|
Payments Due by Period(1)
|
||||||||||||||||||
|
|
|
|
|
Less Than
|
|
|
|
|
|
More Than
|
||||||||||
|
Contractual Obligation
|
|
Total
|
|
1 Year
|
|
1 – 3 Years
|
|
3 – 5 Years
|
|
5 Years
|
||||||||||
|
Debt obligations(2)
|
|
$
|
955,412
|
|
|
$
|
31,962
|
|
|
$
|
923,450
|
|
|
$
|
—
|
|
|
$
|
—
|
|
|
Leases
|
|
553,619
|
|
|
30,400
|
|
|
60,615
|
|
|
67,262
|
|
|
395,342
|
|
|||||
|
Purchase obligations
|
|
15,132
|
|
|
9,063
|
|
|
5,007
|
|
|
1,062
|
|
|
—
|
|
|||||
|
Amounts due under executive deferred compensation plan
|
|
14,957
|
|
|
14,957
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|||||
|
Total
|
|
$
|
1,539,120
|
|
|
$
|
86,382
|
|
|
$
|
989,072
|
|
|
$
|
68,324
|
|
|
$
|
395,342
|
|
|
(1)
|
The table excludes
$132.9 million
of contingent legal liability,
$128.0 million
of contingent consideration payments related to acquisitions, and
$49.0 million
of uncertain tax positions. These items were excluded because we cannot make reasonably reliable estimates regarding the timing and amounts of the settlement of such contingent payments or uncertain positions, if any. See notes “10. Legal Proceedings”, “3. Acquisitions”, and “11. Income Taxes”, respectively, in Part II, Item 8 of this Form 10-K for further discussions of these items.
|
|
(2)
|
Debt obligations include the principal amount of our convertible senior notes due 2016 and 2014, as well as interest payments to be made under the notes. Although these notes mature in 2016 and 2014 respectively, they can be converted into cash and shares of our common stock prior to maturity if certain conditions are met. Any conversion prior to maturity can result in repayments of the principal amounts sooner than the scheduled repayments as indicated in the table. See note “6. Convertible Senior Notes” in Part II, Item 8 of this Form 10-K for further discussion of the terms of the convertible senior notes.
|
|
ITEM 7A.
|
Quantitative and Qualitative Disclosures About Market Risk.
|
|
ITEM 8.
|
Financial Statements and Supplementary Data.
|
|
|
Page
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
ASSETS
|
|||||||
|
Current assets:
|
|
|
|
|
|
||
|
Cash and cash equivalents
|
$
|
711,637
|
|
|
$
|
433,981
|
|
|
Short-term investments
|
453,966
|
|
|
916,223
|
|
||
|
Accounts receivable, net
|
238,946
|
|
|
214,975
|
|
||
|
Inventory
|
154,099
|
|
|
158,718
|
|
||
|
Deferred tax assets, current portion
|
36,076
|
|
|
30,451
|
|
||
|
Prepaid expenses and other current assets
|
22,811
|
|
|
32,700
|
|
||
|
Total current assets
|
1,617,535
|
|
|
1,787,048
|
|
||
|
Property and equipment, net
|
202,666
|
|
|
166,167
|
|
||
|
Goodwill
|
723,061
|
|
|
369,327
|
|
||
|
Intangible assets, net
|
331,173
|
|
|
130,196
|
|
||
|
Deferred tax assets, long-term portion
|
88,480
|
|
|
40,183
|
|
||
|
Other assets
|
56,091
|
|
|
73,164
|
|
||
|
Total assets
|
$
|
3,019,006
|
|
|
$
|
2,566,085
|
|
|
LIABILITIES AND STOCKHOLDERS’ EQUITY
|
|||||||
|
Current liabilities:
|
|
|
|
|
|
||
|
Accounts payable
|
$
|
73,655
|
|
|
$
|
65,727
|
|
|
Accrued liabilities
|
219,120
|
|
|
201,877
|
|
||
|
Long-term debt, current portion
|
29,288
|
|
|
36,967
|
|
||
|
Total current liabilities
|
322,063
|
|
|
304,571
|
|
||
|
Long-term debt
|
839,305
|
|
|
805,406
|
|
||
|
Long-term legal contingencies
|
132,933
|
|
|
—
|
|
||
|
Other long-term liabilities
|
191,221
|
|
|
134,369
|
|
||
|
Commitments and contingencies
|
|
|
|
|
|
||
|
Conversion option subject to cash settlement
|
282
|
|
|
3,158
|
|
||
|
Stockholders’ equity:
|
|
|
|
|
|||
|
Preferred stock: $0.01 par value, 10,000 shares authorized; no shares issued and outstanding at December 29, 2013 and December 30, 2012
|
—
|
|
|
—
|
|
||
|
Common stock, $0.01 par value, 320,000 shares authorized; 175,205 shares issued and 127,723 outstanding at December 29, 2013; 170,171 shares issued and 123,943 outstanding at December 30, 2012
|
1,753
|
|
|
1,703
|
|
||
|
Additional paid-in capital
|
2,562,705
|
|
|
2,419,831
|
|
||
|
Accumulated other comprehensive income
|
1,234
|
|
|
2,123
|
|
||
|
Retained earnings
|
207,855
|
|
|
82,547
|
|
||
|
Treasury stock, 47,482 shares and 46,228 shares at cost at December 29, 2013 and December 30, 2012, respectively
|
(1,240,345
|
)
|
|
(1,187,623
|
)
|
||
|
Total stockholders’ equity
|
1,533,202
|
|
|
1,318,581
|
|
||
|
Total liabilities and stockholders’ equity
|
$
|
3,019,006
|
|
|
$
|
2,566,085
|
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Revenue:
|
|
|
|
|
|
|
|
|
|||
|
Product revenue
|
$
|
1,264,656
|
|
|
$
|
1,055,826
|
|
|
$
|
987,280
|
|
|
Service and other revenue
|
156,522
|
|
|
92,690
|
|
|
68,255
|
|
|||
|
Total revenue
|
1,421,178
|
|
|
1,148,516
|
|
|
1,055,535
|
|
|||
|
Cost of revenue:
|
|
|
|
|
|
|
|
|
|||
|
Cost of product revenue
|
407,877
|
|
|
317,283
|
|
|
308,228
|
|
|||
|
Cost of service and other revenue
|
67,811
|
|
|
43,552
|
|
|
26,118
|
|
|||
|
Amortization of acquired intangible assets
|
33,603
|
|
|
14,153
|
|
|
12,091
|
|
|||
|
Total cost of revenue
|
509,291
|
|
|
374,988
|
|
|
346,437
|
|
|||
|
Gross profit
|
911,887
|
|
|
773,528
|
|
|
709,098
|
|
|||
|
Operating expense:
|
|
|
|
|
|
|
|
|
|||
|
Research and development
|
276,743
|
|
|
231,025
|
|
|
196,913
|
|
|||
|
Selling, general and administrative
|
381,040
|
|
|
285,991
|
|
|
261,843
|
|
|||
|
Legal contingencies
|
115,369
|
|
|
—
|
|
|
—
|
|
|||
|
Unsolicited tender offer related expense
|
13,621
|
|
|
23,136
|
|
|
—
|
|
|||
|
Acquisition related (gain) expense, net
|
(11,617
|
)
|
|
2,774
|
|
|
919
|
|
|||
|
Headquarter relocation
|
2,624
|
|
|
26,328
|
|
|
41,826
|
|
|||
|
Restructuring
|
—
|
|
|
3,522
|
|
|
8,136
|
|
|||
|
Total operating expense
|
777,780
|
|
|
572,776
|
|
|
509,637
|
|
|||
|
Income from operations
|
134,107
|
|
|
200,752
|
|
|
199,461
|
|
|||
|
Other income (expense):
|
|
|
|
|
|
|
|
|
|||
|
Interest income
|
4,887
|
|
|
16,208
|
|
|
7,052
|
|
|||
|
Interest expense
|
(39,690
|
)
|
|
(37,779
|
)
|
|
(34,790
|
)
|
|||
|
Cost-method investment related gain, net
|
61,357
|
|
|
45,911
|
|
|
—
|
|
|||
|
Other expense, net
|
(1,347
|
)
|
|
(2,484
|
)
|
|
(38,678
|
)
|
|||
|
Total other income (expense), net
|
25,207
|
|
|
21,856
|
|
|
(66,416
|
)
|
|||
|
Income before income taxes
|
159,314
|
|
|
222,608
|
|
|
133,045
|
|
|||
|
Provision for income taxes
|
34,006
|
|
|
71,354
|
|
|
46,417
|
|
|||
|
Net income
|
$
|
125,308
|
|
|
$
|
151,254
|
|
|
$
|
86,628
|
|
|
Net income per basic share
|
$
|
1.00
|
|
|
$
|
1.23
|
|
|
$
|
0.70
|
|
|
Net income per diluted share
|
$
|
0.90
|
|
|
$
|
1.13
|
|
|
$
|
0.62
|
|
|
Shares used in calculating basic net income per share
|
125,076
|
|
|
122,999
|
|
|
123,399
|
|
|||
|
Shares used in calculating diluted net income per share
|
139,936
|
|
|
133,693
|
|
|
138,937
|
|
|||
|
|
|
Years Ended
|
||||||||||
|
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Net income
|
|
$
|
125,308
|
|
|
$
|
151,254
|
|
|
$
|
86,628
|
|
|
Unrealized (loss) gain on available-for-sale securities, net of deferred tax
|
|
(889
|
)
|
|
6
|
|
|
352
|
|
|||
|
Total comprehensive income
|
|
$
|
124,419
|
|
|
$
|
151,260
|
|
|
$
|
86,980
|
|
|
|
|
|
|
|
Additional
|
|
Accumulated Other
|
|
Retained Earnings
|
|
|
|
|
|
Total
|
||||||||||||||
|
|
Common Stock
|
|
Paid-In
|
|
Comprehensive
|
|
(Accumulated
|
|
Treasury Stock
|
|
Stockholders’
|
||||||||||||||||||
|
|
Shares
|
|
Amount
|
|
Capital
|
|
Income
|
|
Deficit)
|
|
Shares
|
|
Amount
|
|
Equity
|
||||||||||||||
|
|
(In thousands)
|
||||||||||||||||||||||||||||
|
Balance as of January 2, 2011
|
151,513
|
|
|
1,516
|
|
|
1,891,288
|
|
|
1,765
|
|
|
(155,335
|
)
|
|
(24,904
|
)
|
|
(541,559
|
)
|
|
1,197,675
|
|
||||||
|
Net income
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
86,628
|
|
|
—
|
|
|
—
|
|
|
86,628
|
|
||||||
|
Unrealized gain on available-for-sale securities, net of deferred tax
|
—
|
|
|
—
|
|
|
—
|
|
|
352
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
352
|
|
||||||
|
Issuance of common stock, net of repurchases
|
15,194
|
|
|
152
|
|
|
104,268
|
|
|
—
|
|
|
—
|
|
|
(19,990
|
)
|
|
(572,207
|
)
|
|
(467,787
|
)
|
||||||
|
Convertible note, equity portion, net of tax and issuance costs
|
—
|
|
|
—
|
|
|
155,366
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
155,366
|
|
||||||
|
Tax impact from the issuance of convertible debt
|
—
|
|
|
—
|
|
|
(59,427
|
)
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
(59,427
|
)
|
||||||
|
Tax benefit related to conversions of convertible debt
|
—
|
|
|
—
|
|
|
11,409
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
11,409
|
|
||||||
|
Reclassification of conversion option subject to cash settlement
|
—
|
|
|
—
|
|
|
7,667
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
7,667
|
|
||||||
|
Share-based compensation
|
—
|
|
|
—
|
|
|
92,153
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
92,153
|
|
||||||
|
Net incremental tax benefit related to share-based compensation
|
—
|
|
|
—
|
|
|
43,122
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
43,122
|
|
||||||
|
Equity based contingent compensation
|
—
|
|
|
—
|
|
|
3,457
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
3,457
|
|
||||||
|
Issuance of treasury stock
|
—
|
|
|
—
|
|
|
597
|
|
|
—
|
|
|
—
|
|
|
229
|
|
|
4,003
|
|
|
4,600
|
|
||||||
|
Balance as of January 1, 2012
|
166,707
|
|
|
1,668
|
|
|
2,249,900
|
|
|
2,117
|
|
|
(68,707
|
)
|
|
(44,665
|
)
|
|
(1,109,763
|
)
|
|
1,075,215
|
|
||||||
|
Net income
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
151,254
|
|
|
—
|
|
|
—
|
|
|
151,254
|
|
||||||
|
Unrealized gain on available-for-sale securities, net of deferred tax
|
—
|
|
|
—
|
|
|
—
|
|
|
6
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
6
|
|
||||||
|
Issuance of common stock, net of repurchases
|
3,464
|
|
|
35
|
|
|
55,106
|
|
|
—
|
|
|
—
|
|
|
(1,875
|
)
|
|
(83,306
|
)
|
|
(28,165
|
)
|
||||||
|
Reclassification of conversion option subject to cash settlement
|
—
|
|
|
—
|
|
|
2,565
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
2,565
|
|
||||||
|
Share-based compensation
|
—
|
|
|
—
|
|
|
94,385
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
94,385
|
|
||||||
|
Net incremental tax benefit related to share-based compensation
|
—
|
|
|
—
|
|
|
17,015
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
17,015
|
|
||||||
|
Equity based contingent compensation
|
—
|
|
|
—
|
|
|
6,306
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
6,306
|
|
||||||
|
Issuance of treasury stock
|
—
|
|
|
—
|
|
|
(5,446
|
)
|
|
—
|
|
|
—
|
|
|
312
|
|
|
5,446
|
|
|
—
|
|
||||||
|
Balance as of December 30, 2012
|
170,171
|
|
|
1,703
|
|
|
2,419,831
|
|
|
2,123
|
|
|
82,547
|
|
|
(46,228
|
)
|
|
(1,187,623
|
)
|
|
1,318,581
|
|
||||||
|
Net income
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
125,308
|
|
|
—
|
|
|
—
|
|
|
125,308
|
|
||||||
|
Unrealized loss on available-for-sale securities, net of deferred tax
|
—
|
|
|
—
|
|
|
—
|
|
|
(889
|
)
|
|
—
|
|
|
—
|
|
|
—
|
|
|
(889
|
)
|
||||||
|
Issuance of common stock, net of repurchases
|
5,034
|
|
|
50
|
|
|
98,215
|
|
|
—
|
|
|
—
|
|
|
(1,254
|
)
|
|
(52,722
|
)
|
|
45,543
|
|
||||||
|
Reclassification of conversion option subject to cash settlement
|
—
|
|
|
—
|
|
|
2,338
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
2,338
|
|
||||||
|
Share-based compensation
|
—
|
|
|
—
|
|
|
105,771
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
105,771
|
|
||||||
|
Net incremental tax benefit related to share-based compensation
|
—
|
|
|
—
|
|
|
53,032
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
53,032
|
|
||||||
|
Equity based contingent compensation
|
—
|
|
|
—
|
|
|
8,278
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
8,278
|
|
||||||
|
Fair value of options assumed in acquisition
|
—
|
|
|
—
|
|
|
240
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
240
|
|
||||||
|
Warrant retirement
|
—
|
|
|
—
|
|
|
(125,000
|
)
|
|
—
|
|
|
—
|
|
|
—
|
|
|
—
|
|
|
(125,000
|
)
|
||||||
|
Balance as of December 29, 2013
|
175,205
|
|
|
$
|
1,753
|
|
|
$
|
2,562,705
|
|
|
$
|
1,234
|
|
|
$
|
207,855
|
|
|
(47,482
|
)
|
|
$
|
(1,240,345
|
)
|
|
$
|
1,533,202
|
|
|
ILLUMINA, INC.
CONSOLIDATED STATEMENTS OF CASH FLOWS
(In thousands)
|
|||||||||||
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Cash flows from operating activities:
|
|
|
|
|
|
|
|
|
|||
|
Net income
|
$
|
125,308
|
|
|
$
|
151,254
|
|
|
$
|
86,628
|
|
|
Adjustments to reconcile net income to net cash provided by operating activities:
|
|||||||||||
|
Depreciation expense
|
50,810
|
|
|
48,249
|
|
|
55,575
|
|
|||
|
Amortization of intangible assets
|
47,115
|
|
|
17,070
|
|
|
13,617
|
|
|||
|
Share-based compensation expense
|
105,826
|
|
|
94,324
|
|
|
92,092
|
|
|||
|
Accretion of debt discount
|
36,237
|
|
|
35,004
|
|
|
32,173
|
|
|||
|
Change in facility exit obligation
|
2,624
|
|
|
22,367
|
|
|
23,638
|
|
|||
|
Contingent compensation expense
|
8,278
|
|
|
6,306
|
|
|
3,457
|
|
|||
|
Incremental tax benefit related to share-based compensation
|
(56,678
|
)
|
|
(20,783
|
)
|
|
(46,354
|
)
|
|||
|
Deferred income taxes
|
(36,663
|
)
|
|
(21,698
|
)
|
|
19,227
|
|
|||
|
Change in fair value of contingent consideration
|
(18,784
|
)
|
|
1,975
|
|
|
(4,500
|
)
|
|||
|
Cost-method investment related gain, net
|
(61,357
|
)
|
|
(45,911
|
)
|
|
—
|
|
|||
|
Impairments
|
25,214
|
|
|
21,438
|
|
|
—
|
|
|||
|
Loss on extinguishment of debt
|
555
|
|
|
—
|
|
|
37,611
|
|
|||
|
Other
|
4,533
|
|
|
251
|
|
|
9,949
|
|
|||
|
Changes in operating assets and liabilities:
|
|
|
|
|
|
||||||
|
Accounts receivable
|
(15,928
|
)
|
|
(34,441
|
)
|
|
(7,011
|
)
|
|||
|
Inventory
|
6,217
|
|
|
(23,707
|
)
|
|
22,152
|
|
|||
|
Prepaid expenses and other current assets
|
1,783
|
|
|
(3,062
|
)
|
|
(2,016
|
)
|
|||
|
Other assets
|
(16,357
|
)
|
|
(2,903
|
)
|
|
(4,004
|
)
|
|||
|
Accounts payable
|
2,389
|
|
|
15,112
|
|
|
(21,097
|
)
|
|||
|
Accrued liabilities
|
38,550
|
|
|
24,388
|
|
|
38,945
|
|
|||
|
Long-term legal contingencies
|
132,933
|
|
|
—
|
|
|
—
|
|
|||
|
Other long-term liabilities
|
3,816
|
|
|
6,640
|
|
|
8,058
|
|
|||
|
Net cash provided by operating activities
|
386,421
|
|
|
291,873
|
|
|
358,140
|
|
|||
|
Cash flows from investing activities:
|
|
|
|
|
|
|
|
|
|||
|
Purchases of available-for-sale securities
|
(364,001
|
)
|
|
(925,478
|
)
|
|
(1,310,269
|
)
|
|||
|
Sales of available-for-sale securities
|
523,635
|
|
|
498,371
|
|
|
568,447
|
|
|||
|
Maturities of available-for-sale securities
|
289,197
|
|
|
400,379
|
|
|
492,444
|
|
|||
|
Net cash paid for acquisitions
|
(523,501
|
)
|
|
(83,156
|
)
|
|
(58,302
|
)
|
|||
|
Proceeds from (purchases of) strategic investments
|
95,580
|
|
|
40,881
|
|
|
(13,769
|
)
|
|||
|
Purchases of property and equipment
|
(79,215
|
)
|
|
(68,781
|
)
|
|
(77,800
|
)
|
|||
|
Cash paid for intangible assets
|
(11,344
|
)
|
|
(12,228
|
)
|
|
(1,750
|
)
|
|||
|
Net cash used in investing activities
|
(69,649
|
)
|
|
(150,012
|
)
|
|
(400,999
|
)
|
|||
|
Cash flows from financing activities:
|
|
|
|
|
|
|
|
|
|||
|
Payments on current portion of long-term financing obligations
|
(10,852
|
)
|
|
—
|
|
|
(349,874
|
)
|
|||
|
Payments on acquisition related contingent consideration liability
|
(3,985
|
)
|
|
(3,374
|
)
|
|
—
|
|
|||
|
Proceeds from issuance of convertible notes
|
—
|
|
|
—
|
|
|
903,492
|
|
|||
|
Incremental tax benefit related to share-based compensation
|
56,678
|
|
|
20,783
|
|
|
46,354
|
|
|||
|
Common stock repurchases
|
(50,020
|
)
|
|
(82,522
|
)
|
|
(570,406
|
)
|
|||
|
(Payments for) proceeds from warrant settlements
|
(125,000
|
)
|
|
—
|
|
|
5,512
|
|
|||
|
Proceeds from issuance of common stock
|
94,460
|
|
|
54,358
|
|
|
61,938
|
|
|||
|
Net cash (used in) provided by financing activities
|
(38,719
|
)
|
|
(10,755
|
)
|
|
97,016
|
|
|||
|
Effect of exchange rate changes on cash and cash equivalents
|
(397
|
)
|
|
(103
|
)
|
|
(126
|
)
|
|||
|
Net increase in cash and cash equivalents
|
277,656
|
|
|
131,003
|
|
|
54,031
|
|
|||
|
Cash and cash equivalents at beginning of year
|
433,981
|
|
|
302,978
|
|
|
248,947
|
|
|||
|
Cash and cash equivalents at end of year
|
$
|
711,637
|
|
|
$
|
433,981
|
|
|
$
|
302,978
|
|
|
|
|
|
|
|
|
||||||
|
Supplemental cash flow information:
|
|
|
|
|
|
|
|
|
|||
|
Cash paid for income taxes
|
$
|
50,086
|
|
|
$
|
74,037
|
|
|
$
|
9,806
|
|
|
Unsettled short-term investments purchase
|
$
|
—
|
|
|
$
|
9,154
|
|
|
$
|
—
|
|
|
1.
|
Organization and Summary of Significant Accounting Policies
|
|
•
|
Level 1 —
Quoted prices in active markets for identical assets or liabilities.
|
|
•
|
Level 2 —
Inputs, other than Level 1, that are observable, either directly or indirectly, such as quoted prices for similar assets or liabilities; quoted prices in markets that are not active; or other inputs that are observable or can be corroborated by observable market data for substantially the full term of the assets or liabilities.
|
|
•
|
Level 3 —
Unobservable inputs that are supported by little or no market activity and that are significant to the fair value of the assets or liabilities.
|
|
|
Years Ended
|
|||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
|||
|
Weighted average shares outstanding
|
125,076
|
|
|
122,999
|
|
|
123,399
|
|
|
Effect of dilutive potential common shares from:
|
|
|
|
|
|
|||
|
Convertible senior notes
|
1,340
|
|
|
967
|
|
|
3,783
|
|
|
Equity awards
|
4,404
|
|
|
3,906
|
|
|
4,703
|
|
|
Warrants
|
9,116
|
|
|
5,821
|
|
|
7,052
|
|
|
Weighted average shares used in calculating diluted net income per share
|
139,936
|
|
|
133,693
|
|
|
138,937
|
|
|
Potentially dilutive shares excluded from calculation due to anti-dilutive effect
|
996
|
|
|
2,556
|
|
|
2,418
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Foreign currency translation adjustments
|
$
|
1,289
|
|
|
$
|
1,289
|
|
|
Unrealized (loss) gain on available-for-sale securities, net of deferred tax
|
(55
|
)
|
|
834
|
|
||
|
Total accumulated other comprehensive income
|
$
|
1,234
|
|
|
$
|
2,123
|
|
|
2.
|
Balance Sheet Account Details
|
|
|
December 29, 2013
|
|
December 30, 2012
|
||||||||||||||||||||||||||||
|
|
Amortized
Cost
|
|
Gross
Unrealized
Gains
|
|
Gross
Unrealized
Losses
|
|
Estimated
Fair Value
|
|
Amortized
Cost
|
|
Gross
Unrealized
Gains
|
|
Gross
Unrealized
Losses
|
|
Estimated
Fair Value
|
||||||||||||||||
|
Available-for-sale securities:
|
|||||||||||||||||||||||||||||||
|
Debt securities in government-sponsored entities
|
$
|
82,226
|
|
|
$
|
18
|
|
|
$
|
(101
|
)
|
|
$
|
82,143
|
|
|
$
|
314,638
|
|
|
$
|
251
|
|
|
$
|
(16
|
)
|
|
$
|
314,873
|
|
|
Corporate debt securities
|
342,034
|
|
|
312
|
|
|
(376
|
)
|
|
341,970
|
|
|
471,989
|
|
|
1,059
|
|
|
(187
|
)
|
|
472,861
|
|
||||||||
|
U.S. Treasury securities
|
29,795
|
|
|
58
|
|
|
—
|
|
|
29,853
|
|
|
128,256
|
|
|
233
|
|
|
—
|
|
|
128,489
|
|
||||||||
|
Total available-for-sale securities
|
$
|
454,055
|
|
|
$
|
388
|
|
|
$
|
(477
|
)
|
|
$
|
453,966
|
|
|
$
|
914,883
|
|
|
$
|
1,543
|
|
|
$
|
(203
|
)
|
|
$
|
916,223
|
|
|
|
December 29, 2013
|
|
December 30, 2012
|
||||||||||||
|
|
Estimated Fair Value
|
|
Gross
Unrealized
Losses
|
|
Estimated Fair Value
|
|
Gross
Unrealized
Losses
|
||||||||
|
Debt securities in government-sponsored entities
|
$
|
73,362
|
|
|
$
|
(101
|
)
|
|
$
|
28,176
|
|
|
$
|
(16
|
)
|
|
Corporate debt securities
|
168,118
|
|
|
(373
|
)
|
|
130,224
|
|
|
(187
|
)
|
||||
|
Total
|
$
|
241,480
|
|
|
$
|
(474
|
)
|
|
$
|
158,400
|
|
|
$
|
(203
|
)
|
|
|
Estimated Fair Value
|
||
|
Due within one year
|
$
|
127,081
|
|
|
After one but within five years
|
326,885
|
|
|
|
Total
|
$
|
453,966
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Accounts receivable from product and service sales
|
$
|
241,360
|
|
|
$
|
217,369
|
|
|
Other receivables
|
1,266
|
|
|
1,886
|
|
||
|
Total accounts receivable, gross
|
242,626
|
|
|
219,255
|
|
||
|
Allowance for doubtful accounts
|
(3,680
|
)
|
|
(4,280
|
)
|
||
|
Total accounts receivable, net
|
$
|
238,946
|
|
|
$
|
214,975
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Raw materials
|
$
|
57,398
|
|
|
$
|
61,665
|
|
|
Work in process
|
70,016
|
|
|
75,675
|
|
||
|
Finished goods
|
26,685
|
|
|
21,378
|
|
||
|
Total inventory
|
$
|
154,099
|
|
|
$
|
158,718
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Leasehold improvements
|
$
|
104,571
|
|
|
$
|
87,734
|
|
|
Machinery and equipment
|
175,340
|
|
|
158,112
|
|
||
|
Computer hardware and software
|
73,544
|
|
|
58,313
|
|
||
|
Furniture and fixtures
|
10,511
|
|
|
8,022
|
|
||
|
Building
|
7,670
|
|
|
—
|
|
||
|
Construction in progress
|
8,531
|
|
|
7,390
|
|
||
|
Total property and equipment, gross
|
380,167
|
|
|
319,571
|
|
||
|
Accumulated depreciation
|
(177,501
|
)
|
|
(153,404
|
)
|
||
|
Total property and equipment, net
|
$
|
202,666
|
|
|
$
|
166,167
|
|
|
|
Employee Separation costs
|
|
Facilities Exit Costs
|
|
Other Costs
|
|
Total
|
||||||||
|
Amount recorded in accrued liabilities as of January 1, 2012
|
$
|
3,496
|
|
|
$
|
—
|
|
|
$
|
30
|
|
|
$
|
3,526
|
|
|
Additional expenses
|
2,780
|
|
|
221
|
|
|
521
|
|
|
3,522
|
|
||||
|
Cash payments
|
(6,276
|
)
|
|
(221
|
)
|
|
(551
|
)
|
|
(7,048
|
)
|
||||
|
Amount recorded in accrued liabilities as of December 30, 2012
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
—
|
|
|
Cumulative expense recorded since inception in restructuring expense
|
$
|
10,463
|
|
|
$
|
221
|
|
|
$
|
974
|
|
|
$
|
11,658
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Accrued compensation expenses
|
$
|
82,705
|
|
|
$
|
59,864
|
|
|
Deferred revenue, current portion
|
50,834
|
|
|
55,817
|
|
||
|
Accrued taxes payable
|
30,435
|
|
|
23,021
|
|
||
|
Customer deposits
|
13,569
|
|
|
13,765
|
|
||
|
Reserve for product warranties
|
10,407
|
|
|
10,136
|
|
||
|
Acquisition related contingent consideration liability, current portion
|
6,719
|
|
|
9,490
|
|
||
|
Facility exit obligation, current portion
|
5,570
|
|
|
8,063
|
|
||
|
Unsettled short-term investment purchase
|
—
|
|
|
9,154
|
|
||
|
Other
|
18,881
|
|
|
12,567
|
|
||
|
Total accrued liabilities
|
$
|
219,120
|
|
|
$
|
201,877
|
|
|
3.
|
Acquisitions
|
|
|
Allocation of purchase price
|
||
|
Cash and cash equivalents
|
$
|
9,151
|
|
|
Accounts receivable
|
2,801
|
|
|
|
Inventory
|
1,110
|
|
|
|
Prepaid expenses and other current assets
|
979
|
|
|
|
Property and equipment
|
12,083
|
|
|
|
Other assets
|
978
|
|
|
|
Intangible assets
|
176,490
|
|
|
|
Goodwill
|
227,453
|
|
|
|
Accounts payable
|
(2,539
|
)
|
|
|
Accrued liabilities
|
(3,803
|
)
|
|
|
Lease financing obligation
|
(9,695
|
)
|
|
|
Deferred tax liability
|
(18,741
|
)
|
|
|
Total purchase price
|
$
|
396,267
|
|
|
|
Weighted Average Useful Lives (in years)
|
|
Fair Value
|
||
|
Developed technology
|
13
|
|
$
|
170,200
|
|
|
Customer relationships
|
5
|
|
4,690
|
|
|
|
Trade name
|
2
|
|
1,600
|
|
|
|
Total intangible assets acquired, excluding goodwill
|
|
|
$
|
176,490
|
|
|
|
Years Ended
|
||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Net revenues
|
$
|
1,433,935
|
|
|
$
|
1,161,241
|
|
|
Net income
|
$
|
113,869
|
|
|
$
|
92,645
|
|
|
Net income per share-basic
|
$
|
0.91
|
|
|
$
|
0.75
|
|
|
Net income per share-diluted
|
$
|
0.81
|
|
|
$
|
0.69
|
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Contingent compensation expense, included in research and development expense
|
$
|
544
|
|
|
$
|
3,419
|
|
|
$
|
4,799
|
|
|
Contingent compensation expense, included in selling, general and administrative expense
|
13,066
|
|
|
5,732
|
|
|
1,258
|
|
|||
|
Total contingent compensation expense
|
$
|
13,610
|
|
|
$
|
9,151
|
|
|
$
|
6,057
|
|
|
IPR&D, included in acquisition related expense (gain), net
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
5,425
|
|
|
4.
|
Intangible Assets
|
|
|
December 29, 2013
|
|
December 30, 2012
|
||||||||||||||||||||
|
|
Gross
Carrying
Amount
|
|
Accumulated
Amortization
|
|
Intangibles,
Net
|
|
Gross
Carrying
Amount
|
|
Accumulated
Amortization
|
|
Intangibles,
Net
|
||||||||||||
|
Licensed technologies
|
$
|
48,361
|
|
|
$
|
(31,927
|
)
|
|
$
|
16,434
|
|
|
$
|
47,329
|
|
|
$
|
(25,471
|
)
|
|
$
|
21,858
|
|
|
Core technologies
|
321,700
|
|
|
(45,534
|
)
|
|
276,166
|
|
|
99,800
|
|
|
(27,427
|
)
|
|
72,373
|
|
||||||
|
Customer relationships
|
26,770
|
|
|
(7,376
|
)
|
|
19,394
|
|
|
18,780
|
|
|
(2,214
|
)
|
|
16,566
|
|
||||||
|
License agreements
|
18,917
|
|
|
(4,947
|
)
|
|
13,970
|
|
|
14,404
|
|
|
(3,933
|
)
|
|
10,471
|
|
||||||
|
Trade name
|
11,800
|
|
|
(6,591
|
)
|
|
5,209
|
|
|
9,600
|
|
|
(672
|
)
|
|
8,928
|
|
||||||
|
Total intangible assets, net
|
$
|
427,548
|
|
|
$
|
(96,375
|
)
|
|
$
|
331,173
|
|
|
$
|
189,913
|
|
|
$
|
(59,717
|
)
|
|
$
|
130,196
|
|
|
|
Weighted Average
Useful Lives
(years)
|
|
Gross
Carrying
Amount
|
||
|
Core technologies
|
12
|
|
$
|
249,900
|
|
|
License agreements
|
10
|
|
10,013
|
|
|
|
Customer relationships
|
4
|
|
7,990
|
|
|
|
Trade name
|
2
|
|
2,200
|
|
|
|
Licensed technologies
|
5
|
|
1,032
|
|
|
|
Total intangible asset additions
|
|
|
$
|
271,135
|
|
|
|
Estimated Annual Amortization
|
||
|
2014
|
$
|
49,376
|
|
|
2015
|
45,974
|
|
|
|
2016
|
40,582
|
|
|
|
2017
|
36,106
|
|
|
|
2018
|
27,310
|
|
|
|
Thereafter
|
131,825
|
|
|
|
Total
|
$
|
331,173
|
|
|
5.
|
Fair Value Measurements
|
|
|
December 29, 2013
|
|
December 30, 2012
|
||||||||||||||||||||||||||||
|
|
Level 1
|
|
Level 2
|
|
Level 3
|
|
Total
|
|
Level 1
|
|
Level 2
|
|
Level 3
|
|
Total
|
||||||||||||||||
|
Assets:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
||||||||||||||||
|
Money market funds (cash equivalent)
|
$
|
478,755
|
|
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
478,755
|
|
|
$
|
252,126
|
|
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
252,126
|
|
|
Debt securities in government-sponsored entities
|
—
|
|
|
82,143
|
|
|
—
|
|
|
82,143
|
|
|
—
|
|
|
314,873
|
|
|
—
|
|
|
314,873
|
|
||||||||
|
Corporate debt securities
|
—
|
|
|
341,970
|
|
|
—
|
|
|
341,970
|
|
|
—
|
|
|
472,861
|
|
|
—
|
|
|
472,861
|
|
||||||||
|
U.S. Treasury securities
|
29,853
|
|
|
—
|
|
|
—
|
|
|
29,853
|
|
|
128,489
|
|
|
—
|
|
|
—
|
|
|
128,489
|
|
||||||||
|
Deferred compensation plan assets
|
—
|
|
|
17,805
|
|
|
—
|
|
|
17,805
|
|
|
—
|
|
|
13,626
|
|
|
—
|
|
|
13,626
|
|
||||||||
|
Total assets measured at fair value
|
$
|
508,608
|
|
|
$
|
441,918
|
|
|
$
|
—
|
|
|
$
|
950,526
|
|
|
$
|
380,615
|
|
|
$
|
801,360
|
|
|
$
|
—
|
|
|
$
|
1,181,975
|
|
|
Liabilities:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
||||||||||||||||
|
Acquisition related contingent consideration liabilities
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
49,480
|
|
|
$
|
49,480
|
|
|
$
|
—
|
|
|
$
|
—
|
|
|
$
|
12,519
|
|
|
$
|
12,519
|
|
|
Deferred compensation liability
|
—
|
|
|
14,957
|
|
|
—
|
|
|
14,957
|
|
|
—
|
|
|
12,071
|
|
|
—
|
|
|
12,071
|
|
||||||||
|
Total liabilities measured at fair value
|
$
|
—
|
|
|
$
|
14,957
|
|
|
$
|
49,480
|
|
|
$
|
64,437
|
|
|
$
|
—
|
|
|
$
|
12,071
|
|
|
$
|
12,519
|
|
|
$
|
24,590
|
|
|
|
Contingent
Consideration
Liability
(Level 3 Measurement)
|
||
|
Balance as of January 2, 2011
|
$
|
3,738
|
|
|
Acquisition of Epicentre
|
7,400
|
|
|
|
Change in estimated fair value, recorded in acquisition related (gain) expense, net
|
(4,500
|
)
|
|
|
Balance as of January 1, 2012
|
6,638
|
|
|
|
Acquisition of BlueGnome
|
7,500
|
|
|
|
Change in estimated fair value, recorded in acquisition related (gain) expense, net
|
1,975
|
|
|
|
Cash payments
|
(3,594
|
)
|
|
|
Balance as of December 30, 2012
|
12,519
|
|
|
|
Additional liability recorded for current period acquisitions
|
60,184
|
|
|
|
Change in estimated fair value, recorded in acquisition related (gain) expense, net
|
(18,784
|
)
|
|
|
Cash payments
|
(4,439
|
)
|
|
|
Balance as of December 29, 2013
|
$
|
49,480
|
|
|
6.
|
Convertible Senior Notes
|
|
|
|
2014 Notes
|
||
|
Cash paid for principal of notes converted
|
|
$
|
10,555
|
|
|
Conversion value over principal amount paid in shares of common stock
|
|
$
|
21,217
|
|
|
Number of shares of common stock issued upon conversion
|
|
317
|
|
|
|
Loss on extinguishment of debt
|
|
$
|
555
|
|
|
Effective interest rate used to measure fair value of converted notes upon conversion
|
|
0.5% - 0.8%
|
|
|
|
|
December 29, 2013
|
|
December 30, 2012
|
||||
|
Principal amount of convertible notes outstanding
|
$
|
949,570
|
|
|
$
|
960,125
|
|
|
Unamortized discount of liability component
|
(80,977
|
)
|
|
(117,752
|
)
|
||
|
Net carrying amount of liability component
|
868,593
|
|
|
842,373
|
|
||
|
Less: current portion
|
(29,288
|
)
|
|
(36,967
|
)
|
||
|
Long-term debt
|
$
|
839,305
|
|
|
$
|
805,406
|
|
|
Conversion option subject to cash settlement
|
$
|
282
|
|
|
$
|
3,158
|
|
|
Carrying value of equity component, net of issuance costs
|
$
|
274,304
|
|
|
$
|
271,966
|
|
|
Fair value of outstanding notes
|
$
|
1,428,743
|
|
|
$
|
993,916
|
|
|
Weighted average remaining amortization period of discount on the liability component
|
2 years
|
|
|
3 years
|
|
||
|
7.
|
Commitments
|
|
|
Operating Leases
|
|
Sublease Income
|
|
Net Operating Leases
|
||||||
|
2014
|
$
|
29,526
|
|
|
$
|
(2,478
|
)
|
|
$
|
27,048
|
|
|
2015
|
29,463
|
|
|
(2,552
|
)
|
|
26,911
|
|
|||
|
2016
|
29,327
|
|
|
(2,629
|
)
|
|
26,698
|
|
|||
|
2017
|
29,383
|
|
|
(2,708
|
)
|
|
26,675
|
|
|||
|
2018
|
29,601
|
|
|
(2,789
|
)
|
|
26,812
|
|
|||
|
Thereafter
|
395,342
|
|
|
(14,708
|
)
|
|
380,634
|
|
|||
|
Total minimum lease payments
|
$
|
542,642
|
|
|
$
|
(27,864
|
)
|
|
$
|
514,778
|
|
|
|
Headquarter Facility Exit Obligation
|
||
|
Balance as of January 1, 2012:
|
$
|
25,049
|
|
|
Adjustment to facility exit obligation
|
24,878
|
|
|
|
Accretion of interest expense
|
2,129
|
|
|
|
Cash payments
|
(6,704
|
)
|
|
|
Balance as of December 30, 2012:
|
45,352
|
|
|
|
Adjustment to facility exit obligation
|
(114
|
)
|
|
|
Accretion of interest expense
|
2,738
|
|
|
|
Cash payments
|
(9,758
|
)
|
|
|
Balance as of December 29, 2013
|
$
|
38,218
|
|
|
|
Warranty Reserve
|
||
|
Balance as of January 2, 2011
|
$
|
16,761
|
|
|
Additions charged to cost of revenue
|
17,913
|
|
|
|
Repairs and replacements
|
(22,708
|
)
|
|
|
Balance as of January 1, 2012
|
11,966
|
|
|
|
Additions charged to cost of revenue
|
17,279
|
|
|
|
Repairs and replacements
|
(19,109
|
)
|
|
|
Balance as of December 30, 2012
|
10,136
|
|
|
|
Additions charged to cost of revenue
|
15,674
|
|
|
|
Repairs and replacements
|
(15,403
|
)
|
|
|
Balance as of December 29, 2013
|
$
|
10,407
|
|
|
8.
|
Share-based Compensation Expense
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Cost of product revenue
|
$
|
6,223
|
|
|
$
|
7,575
|
|
|
$
|
6,951
|
|
|
Cost of service and other revenue
|
777
|
|
|
461
|
|
|
695
|
|
|||
|
Research and development
|
37,439
|
|
|
30,879
|
|
|
32,105
|
|
|||
|
Selling, general and administrative
|
61,387
|
|
|
55,409
|
|
|
52,341
|
|
|||
|
Share-based compensation expense before taxes
|
105,826
|
|
|
94,324
|
|
|
92,092
|
|
|||
|
Related income tax benefits
|
(32,819
|
)
|
|
(30,759
|
)
|
|
(32,168
|
)
|
|||
|
Share-based compensation expense, net of taxes
|
$
|
73,007
|
|
|
$
|
63,565
|
|
|
$
|
59,924
|
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Stock options granted:
|
|
|
|
|
|
||||||
|
Risk-free interest rate
|
0.14 - 1.86%
|
|
|
0.56 - 0.93%
|
|
|
0.85 - 2.23%
|
|
|||
|
Expected volatility
|
30 - 44%
|
|
|
41 - 48%
|
|
|
41 - 53%
|
|
|||
|
Expected term
|
0.8 - 9.4 years
|
|
|
4.0 - 6.6 years
|
|
|
4.7 - 5.5 years
|
|
|||
|
Expected dividends
|
—
|
|
|
—
|
|
|
—
|
|
|||
|
Weighted average fair value per share
|
$
|
40.66
|
|
|
$
|
15.47
|
|
|
$
|
27.47
|
|
|
|
|
|
|
|
|
||||||
|
Stock purchased under the ESPP:
|
|
|
|
|
|
||||||
|
Risk-free interest rate
|
0.08 - 0.15%
|
|
|
0.09 - 0.17%
|
|
|
0.16 - 0.30%
|
|
|||
|
Expected volatility
|
31 - 32%
|
|
|
33 - 64%
|
|
|
43 - 48%
|
|
|||
|
Expected term
|
0.5 - 1.0 year
|
|
|
0.5 - 1.0 year
|
|
|
0.5 - 1.0 year
|
|
|||
|
Expected dividends
|
—
|
|
|
—
|
|
|
—
|
|
|||
|
Weighted average fair value per share
|
$
|
19.30
|
|
|
$
|
16.45
|
|
|
$
|
20.08
|
|
|
9.
|
Stockholders’ Equity
|
|
|
Options
(in thousands)
|
|
Weighted-
Average
Exercise Price
|
|||
|
Outstanding at January 2, 2011
|
11,882
|
|
|
$
|
22.83
|
|
|
Granted
|
1,399
|
|
|
64.98
|
|
|
|
Exercised
|
(2,784
|
)
|
|
17.98
|
|
|
|
Cancelled
|
(119
|
)
|
|
33.49
|
|
|
|
Outstanding at January 1, 2012
|
10,378
|
|
|
29.69
|
|
|
|
Granted
|
251
|
|
|
40.79
|
|
|
|
Exercised
|
(2,071
|
)
|
|
20.34
|
|
|
|
Cancelled
|
(207
|
)
|
|
39.18
|
|
|
|
Outstanding at December 30, 2012
|
8,351
|
|
|
32.10
|
|
|
|
Granted
|
512
|
|
|
14.74
|
|
|
|
Exercised
|
(3,006
|
)
|
|
27.70
|
|
|
|
Cancelled
|
(133
|
)
|
|
41.80
|
|
|
|
Outstanding at December 29, 2013
|
5,724
|
|
|
$
|
32.64
|
|
|
|
|
|
|
|
Weighted Average
Grant-Date Fair Value per Share
|
|||||||||||||||
|
|
RSA
|
|
RSU
|
|
PSU
|
|
RSA
|
|
RSU
|
|
PSU
|
|||||||||
|
Outstanding at January 2, 2011
|
—
|
|
|
3,109
|
|
|
—
|
|
|
$
|
—
|
|
|
$
|
40.39
|
|
|
$
|
—
|
|
|
Awarded
|
230
|
|
|
1,550
|
|
|
—
|
|
|
65.95
|
|
|
42.02
|
|
|
—
|
|
|||
|
Vested
|
—
|
|
|
(827
|
)
|
|
—
|
|
|
—
|
|
|
36.47
|
|
|
—
|
|
|||
|
Cancelled
|
—
|
|
|
(356
|
)
|
|
—
|
|
|
—
|
|
|
42.15
|
|
|
—
|
|
|||
|
Outstanding at January 1, 2012
|
230
|
|
|
3,476
|
|
|
—
|
|
|
65.95
|
|
|
41.87
|
|
|
—
|
|
|||
|
Awarded
|
312
|
|
|
1,640
|
|
|
599
|
|
|
47.91
|
|
|
48.52
|
|
|
49.66
|
|
|||
|
Vested
|
(77
|
)
|
|
(1,062
|
)
|
|
—
|
|
|
65.95
|
|
|
38.48
|
|
|
—
|
|
|||
|
Cancelled
|
—
|
|
|
(394
|
)
|
|
(12
|
)
|
|
—
|
|
|
45.05
|
|
|
50.54
|
|
|||
|
Outstanding at December 30, 2012
|
465
|
|
|
3,660
|
|
|
587
|
|
|
53.84
|
|
|
45.49
|
|
|
49.64
|
|
|||
|
Awarded
|
—
|
|
|
1,532
|
|
|
584
|
|
|
—
|
|
|
77.53
|
|
|
59.16
|
|
|||
|
Vested
|
(217
|
)
|
|
(1,308
|
)
|
|
—
|
|
|
54.27
|
|
|
42.97
|
|
|
—
|
|
|||
|
Cancelled
|
—
|
|
|
(256
|
)
|
|
(70
|
)
|
|
—
|
|
|
49.24
|
|
|
50.42
|
|
|||
|
Outstanding at December 29, 2013
|
248
|
|
|
3,628
|
|
|
1,101
|
|
|
$
|
53.46
|
|
|
$
|
59.66
|
|
|
$
|
54.64
|
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Pre-tax intrinsic value of outstanding restricted and performance stock:
|
|
|
|
|
|
||||||
|
RSA
|
$
|
27,384
|
|
|
$
|
25,437
|
|
|
$
|
6,986
|
|
|
RSU
|
400,421
|
|
|
200,383
|
|
|
105,944
|
|
|||
|
PSU
|
121,555
|
|
|
32,149
|
|
|
—
|
|
|||
|
|
|
|
|
|
|
||||||
|
Fair value of restricted and performance stock vested:
|
|
|
|
|
|
||||||
|
RSA
|
$
|
11,750
|
|
|
$
|
5,039
|
|
|
—
|
|
|
|
RSU
|
56,212
|
|
|
40,870
|
|
|
30,155
|
|
|||
|
PSU
|
—
|
|
|
—
|
|
|
—
|
|
|||
|
10.
|
Legal Proceedings
|
|
11.
|
Income Taxes
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
United States
|
$
|
(53,703
|
)
|
|
$
|
102,296
|
|
|
$
|
(7,100
|
)
|
|
Foreign
|
213,017
|
|
|
120,312
|
|
|
140,145
|
|
|||
|
Total income before income taxes
|
$
|
159,314
|
|
|
$
|
222,608
|
|
|
$
|
133,045
|
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Current:
|
|
|
|
|
|
|
|
|
|||
|
Federal
|
$
|
78,419
|
|
|
$
|
57,285
|
|
|
$
|
43,161
|
|
|
State
|
8,854
|
|
|
10,121
|
|
|
3,958
|
|
|||
|
Foreign
|
39,416
|
|
|
31,504
|
|
|
24,154
|
|
|||
|
Total current provision
|
126,689
|
|
|
98,910
|
|
|
71,273
|
|
|||
|
Deferred:
|
|
|
|
|
|
|
|
|
|||
|
Federal
|
(69,102
|
)
|
|
(7,724
|
)
|
|
(22,738
|
)
|
|||
|
State
|
(15,222
|
)
|
|
(7,708
|
)
|
|
(8,050
|
)
|
|||
|
Foreign
|
(8,359
|
)
|
|
(12,124
|
)
|
|
5,932
|
|
|||
|
Total deferred benefit
|
(92,683
|
)
|
|
(27,556
|
)
|
|
(24,856
|
)
|
|||
|
Total tax provision
|
$
|
34,006
|
|
|
$
|
71,354
|
|
|
$
|
46,417
|
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Tax at federal statutory rate
|
$
|
55,760
|
|
|
$
|
77,913
|
|
|
$
|
46,566
|
|
|
State, net of federal benefit
|
647
|
|
|
4,056
|
|
|
(49
|
)
|
|||
|
Research and other credits
|
(10,977
|
)
|
|
(2,613
|
)
|
|
(7,418
|
)
|
|||
|
Acquired in-process research & development
|
—
|
|
|
137
|
|
|
1,989
|
|
|||
|
Change in valuation allowance
|
10,544
|
|
|
(37
|
)
|
|
(688
|
)
|
|||
|
Permanent differences
|
1,120
|
|
|
2,380
|
|
|
1,668
|
|
|||
|
Change in fair value of contingent consideration
|
(3,859
|
)
|
|
—
|
|
|
(1,311
|
)
|
|||
|
Impact of foreign operations
|
(18,006
|
)
|
|
(11,470
|
)
|
|
5,579
|
|
|||
|
Other
|
(1,223
|
)
|
|
988
|
|
|
81
|
|
|||
|
Total tax provision
|
$
|
34,006
|
|
|
$
|
71,354
|
|
|
$
|
46,417
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
Deferred tax assets:
|
|
|
|
|
|
||
|
Net operating losses
|
$
|
66,969
|
|
|
$
|
2,564
|
|
|
Tax credits
|
36,277
|
|
|
16,447
|
|
||
|
Other accruals and reserves
|
103,539
|
|
|
47,306
|
|
||
|
Stock compensation
|
36,728
|
|
|
39,175
|
|
||
|
Inventory adjustments
|
9,034
|
|
|
8,977
|
|
||
|
Impairment of cost-method investment
|
3,540
|
|
|
1,406
|
|
||
|
Other amortization
|
9,571
|
|
|
5,195
|
|
||
|
Other
|
14,704
|
|
|
13,469
|
|
||
|
Total gross deferred tax assets
|
280,362
|
|
|
134,539
|
|
||
|
Valuation allowance on deferred tax assets
|
(19,132
|
)
|
|
(1,756
|
)
|
||
|
Total deferred tax assets
|
261,230
|
|
|
132,783
|
|
||
|
Deferred tax liabilities:
|
|
|
|
|
|
||
|
Purchased intangible amortization
|
(98,671
|
)
|
|
(20,116
|
)
|
||
|
Convertible debt
|
(27,821
|
)
|
|
(38,910
|
)
|
||
|
Property and equipment
|
(13,311
|
)
|
|
(10,867
|
)
|
||
|
Other
|
(6,349
|
)
|
|
(6,682
|
)
|
||
|
Total deferred tax liabilities
|
(146,152
|
)
|
|
(76,575
|
)
|
||
|
Net deferred tax assets
|
$
|
115,078
|
|
|
$
|
56,208
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
Balance at beginning of year
|
$
|
37,585
|
|
|
$
|
28,396
|
|
|
$
|
22,729
|
|
|
Increases related to prior year tax positions
|
4,794
|
|
|
2,573
|
|
|
875
|
|
|||
|
Decreases related to prior year tax positions
|
(223
|
)
|
|
(69
|
)
|
|
(382
|
)
|
|||
|
Increases related to current year tax positions
|
7,503
|
|
|
6,685
|
|
|
5,174
|
|
|||
|
Decreases related to lapse of statute of limitations
|
(613
|
)
|
|
—
|
|
|
—
|
|
|||
|
Balance at end of year
|
$
|
49,046
|
|
|
$
|
37,585
|
|
|
$
|
28,396
|
|
|
12.
|
Employee Benefit Plans
|
|
13.
|
Segment Information, Geographic Data, and Significant Customers
|
|
|
Years Ended
|
||||||||||
|
|
December 29,
2013 |
|
December 30,
2012 |
|
January 1,
2012 |
||||||
|
United States
|
$
|
714,662
|
|
|
$
|
568,443
|
|
|
$
|
528,723
|
|
|
Europe
|
354,682
|
|
|
291,404
|
|
|
277,971
|
|
|||
|
Asia-Pacific
|
276,442
|
|
|
232,498
|
|
|
197,005
|
|
|||
|
Other markets
|
75,392
|
|
|
56,171
|
|
|
51,836
|
|
|||
|
Total
|
$
|
1,421,178
|
|
|
$
|
1,148,516
|
|
|
$
|
1,055,535
|
|
|
|
December 29,
2013 |
|
December 30,
2012 |
||||
|
United States
|
$
|
150,470
|
|
|
$
|
126,749
|
|
|
United Kingdom
|
24,122
|
|
|
21,740
|
|
||
|
Singapore
|
21,311
|
|
|
12,504
|
|
||
|
Other countries
|
6,763
|
|
|
5,174
|
|
||
|
Total
|
$
|
202,666
|
|
|
$
|
166,167
|
|
|
14.
|
Quarterly Financial Information (unaudited)
|
|
|
First Quarter
|
|
Second Quarter
|
|
Third Quarter
|
|
Fourth Quarter
|
||||||||
|
2013
|
|
|
|
|
|
|
|
|
|
|
|
||||
|
Total revenue
|
$
|
330,958
|
|
|
$
|
346,094
|
|
|
$
|
356,800
|
|
|
$
|
387,326
|
|
|
Gross profit
|
$
|
219,292
|
|
|
$
|
223,409
|
|
|
$
|
209,940
|
|
|
$
|
259,246
|
|
|
Net (loss) income
|
$
|
(22,587
|
)
|
|
$
|
35,877
|
|
|
$
|
31,357
|
|
|
$
|
80,661
|
|
|
Net (loss) income per share, basic
|
$
|
(0.18
|
)
|
|
$
|
0.29
|
|
|
$
|
0.25
|
|
|
$
|
0.64
|
|
|
Net (loss) income per share, diluted
|
$
|
(0.18
|
)
|
|
$
|
0.26
|
|
|
$
|
0.22
|
|
|
$
|
0.56
|
|
|
2012
|
|
|
|
|
|
|
|
||||||||
|
Total revenue
|
$
|
272,770
|
|
|
$
|
280,607
|
|
|
$
|
285,874
|
|
|
$
|
309,265
|
|
|
Gross profit
|
$
|
181,011
|
|
|
$
|
192,997
|
|
|
$
|
195,873
|
|
|
$
|
203,647
|
|
|
Net income
|
$
|
26,202
|
|
|
$
|
23,401
|
|
|
$
|
29,748
|
|
|
$
|
71,903
|
|
|
Net income per share, basic
|
$
|
0.21
|
|
|
$
|
0.19
|
|
|
$
|
0.24
|
|
|
$
|
0.58
|
|
|
Net income per share, diluted
|
$
|
0.20
|
|
|
$
|
0.18
|
|
|
$
|
0.22
|
|
|
$
|
0.53
|
|
|
15.
|
Unsolicited Tender Offer
|
|
ITEM 9A.
|
Controls and Procedures.
|
|
ITEM 9B.
|
Other Information.
|
|
ITEM 10.
|
Directors, Executive Officers, and Corporate Governance.
|
|
ITEM 11.
|
Executive Compensation.
|
|
ITEM 12.
|
Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters.
|
|
ITEM 13.
|
Certain Relationships and Related Transactions, and Director Independence.
|
|
ITEM 14.
|
Principal Accountant Fees and Services.
|
|
ITEM 15.
|
Exhibits, Financial Statement Schedules.
|
|
|
Balance at
Beginning of
Period
|
|
Additions Charged
to (Reductions from) Expense/
Revenue(1)
|
|
Deductions(2)
|
|
Balance at
End of
Period
|
||||||
|
|
(In thousands)
|
||||||||||||
|
Year ended December 29, 2013
|
|
|
|
|
|
|
|
||||||
|
Allowance for doubtful accounts
|
$
|
4,280
|
|
|
(422
|
)
|
|
(178
|
)
|
|
$
|
3,680
|
|
|
Year ended December 30, 2012
|
|
|
|
|
|
|
|
|
|
|
|
||
|
Allowance for doubtful accounts
|
$
|
3,997
|
|
|
2,191
|
|
|
(1,908
|
)
|
|
$
|
4,280
|
|
|
Year ended January 1, 2012
|
|
|
|
|
|
|
|
|
|
|
|
||
|
Allowance for doubtful accounts
|
$
|
1,686
|
|
|
4,201
|
|
|
(1,890
|
)
|
|
$
|
3,997
|
|
|
(1)
|
Additions to and reductions from allowance for doubtful accounts are recorded to selling, general and administrative expense.
|
|
(2)
|
Deductions for allowance for doubtful accounts are for accounts receivable written off.
|
|
INDEX TO EXHIBITS
|
|||||||||||||
|
|
|
|
|
Incorporated by Reference
|
|
|
|||||||
|
Exhibit
|
|
|
|
|
|
|
|
|
|
Filing
|
|
Filed
|
|
|
Number
|
|
Exhibit Description
|
|
Form
|
|
File Number
|
|
Exhibit
|
|
Date
|
|
Herewith
|
|
|
2.1
|
|
Agreement and Plan of Merger by and among Illumina, Inc., TP Corporation, Verinata Health, Inc. and Shareholder Representative Services LLC (as the Stockholder Representative), dated as of January 6, 2013
|
|
10-K
|
|
000-35406
|
|
2.1
|
|
|
2/15/2013
|
|
|
|
3.1
|
|
Amended and Restated Certificate of Incorporation
|
|
8-K
|
|
000-30361
|
|
3.1
|
|
|
9/23/2008
|
|
|
|
3.2
|
|
Amended and Restated Bylaws
|
|
8-K
|
|
000-30361
|
|
3.2
|
|
|
4/27/2010
|
|
|
|
4.1
|
|
Specimen Common Stock Certificate
|
|
S-1/A
|
|
333-33922
|
|
4.1
|
|
|
7/3/2000
|
|
|
|
4.2
|
|
Indenture related to the 0.625% Convertible Senior Notes due 2014, dated as of February 16, 2007, between Illumina and The Bank of New York, as trustee
|
|
8-K
|
|
000-30361
|
|
4.1
|
|
|
2/16/2007
|
|
|
|
4.3
|
|
Indenture related to the 0.25% Convertible Senior Notes due 2016, dated as of March 18, 2011, between Illumina and The Bank of New York Mellon Trust Company, N.A., as trustee
|
|
10-Q
|
|
000-30361
|
|
4.1
|
|
|
5/4/2011
|
|
|
|
+10.1
|
|
Form of Indemnification Agreement between Illumina and each of its directors and executive officers
|
|
10-Q
|
|
000-30361
|
|
10.55
|
|
|
7/25/2008
|
|
|
|
+10.2
|
|
Amended and Restated Change in Control Severance Agreement between Illumina and Jay T Flatley, dated October 22, 2008
|
|
10-K
|
|
000-30361
|
|
10.33
|
|
|
2/26/2009
|
|
|
|
+10.3
|
|
Form of Change in Control Severance Agreement between Illumina and each of its executive officers
|
|
10-K
|
|
000-30361
|
|
10.34
|
|
|
2/26/2009
|
|
|
|
+10.4
|
|
2000 Employee Stock Purchase Plan, as amended and restated through February 2, 2012
|
|
10-K
|
|
000-30361
|
|
10.4
|
|
|
2/24/2012
|
|
|
|
+10.5
|
|
2005 Stock and Incentive Plan, as amended and restated through May 29, 2013
|
|
S-8
|
|
333-190322
|
|
4.5
|
|
|
8/2/2013
|
|
|
|
+10.6
|
|
Form of Restricted Stock Unit Agreement for Non-Employee Directors under 2005 Stock and Incentive Plan
|
|
10-K
|
|
000-30361
|
|
10.6
|
|
|
2/24/2012
|
|
|
|
+10.7
|
|
Form of Stock Option Agreement for Non-Employee Directors under 2005 Stock and Incentive Plan
|
|
10-K
|
|
000-30361
|
|
10.7
|
|
|
2/24/2012
|
|
|
|
+10.8
|
|
Form of Restricted Stock Unit Agreement for Employees under 2005 Stock and Incentive Plan
|
|
10-K
|
|
000-30361
|
|
10.8
|
|
|
2/24/2012
|
|
|
|
+10.9
|
|
Form of Stock Option Agreement for Employees under 2005 Stock and Incentive Plan
|
|
10-K
|
|
000-30361
|
|
10.9
|
|
|
2/24/2012
|
|
|
|
+10.10
|
|
New Hire Stock and Incentive Plan, as amended and restated through October 28, 2009
|
|
10-K
|
|
000-30361
|
|
10.7
|
|
|
2/26/2010
|
|
|
|
10.11
|
|
License Agreement, effective as of May 6, 1998, between Tufts University and Illumina
|
|
10-Q
|
|
000-30361
|
|
10.5
|
|
|
5/3/2007
|
|
|
|
INDEX TO EXHIBITS — (Continued)
|
|||||||||||||
|
+10.12
|
|
The Solexa Unapproved Company Share Option Plan
|
|
8-K
|
|
000-30361
|
|
99.3
|
|
|
11/26/2007
|
|
|
|
+10.13
|
|
The Solexa Share Option Plan for Consultants
|
|
8-K
|
|
000-30361
|
|
99.4
|
|
|
11/26/2007
|
|
|
|
+10.14
|
|
Solexa Limited Enterprise Management Incentive Plan
|
|
8-K
|
|
000-30361
|
|
99.5
|
|
|
11/26/2007
|
|
|
|
+10.15
|
|
Amended and Restated Solexa 2005 Equity Incentive Plan
|
|
10-K
|
|
000-30361
|
|
10.25
|
|
|
2/26/2009
|
|
|
|
+10.16
|
|
Amended and Restated Solexa 1992 Stock Option Plan
|
|
10-K
|
|
000-30361
|
|
10.26
|
|
|
2/26/2009
|
|
|
|
10.17
|
|
License Agreement, dated June 24, 2002, between Dade Behring Marburg GmbH and Illumina (with certain confidential portions omitted)
|
|
S-3/A
|
|
333-111496
|
|
10.23
|
|
|
3/2/2004
|
|
|
|
10.18
|
|
Non-exclusive License Agreement, dated January 24, 2002, between Amersham Biosciences Corp. and Illumina (with certain confidential portions omitted)
|
|
S-3/A
|
|
333-111496
|
|
10.24
|
|
|
3/2/2004
|
|
|
|
10.19
|
|
Amended and Restated Lease between BMR-9885 Towne Centre Drive LLC and Illumina for the 9885 Towne Centre Drive property, dated January 26, 2007
|
|
10-Q
|
|
000-30361
|
|
10.41
|
|
|
5/3/2007
|
|
|
|
10.20
|
|
Lease between BMR-9885 Towne Centre Drive LLC and Illumina for the 9865 Towne Centre Drive property, dated January 26, 2007
|
|
10-Q
|
|
000-30361
|
|
10.42
|
|
|
5/3/2007
|
|
|
|
10.21
|
|
Settlement and Release Agreement between Affymetrix, Inc. and Illumina, dated January 9, 2008
|
|
10-K
|
|
000-30361
|
|
10.44
|
|
|
2/26/2008
|
|
|
|
10.22
|
|
Confirmation of Convertible Bond Hedge Transaction, dated February 12, 2007, by and between Illumina and Goldman, Sachs & Co.
|
|
8-K
|
|
000-30361
|
|
10.1
|
|
|
2/16/2007
|
|
|
|
10.23
|
|
Confirmation of Convertible Bond Hedge Transaction, dated February 12, 2007, by and between Illumina and Deutsche Bank AG London
|
|
8-K
|
|
000-30361
|
|
10.2
|
|
|
2/16/2007
|
|
|
|
10.24
|
|
Confirmation Issuer Warrant Transaction, dated February 12, 2007, by and between Illumina and Goldman, Sachs & Co.
|
|
8-K
|
|
000-30361
|
|
10.3
|
|
|
2/16/2007
|
|
|
|
10.25
|
|
Confirmation Issuer Warrant Transaction, dated February 12, 2007, by and between Illumina and Deutsche Bank AG London
|
|
8-K
|
|
000-30361
|
|
10.4
|
|
|
2/16/2007
|
|
|
|
10.26
|
|
Amendment to the Confirmation of Issuer Warrant Transaction, dated February 13, 2007, by and between Illumina and Goldman, Sachs & Co.
|
|
8-K
|
|
000-30361
|
|
10.5
|
|
|
2/16/2007
|
|
|
|
10.27
|
|
Amendment to the Confirmation of Issuer Warrant Transaction, dated February 13, 2007, by and between Illumina and Deutsche Bank AG London
|
|
8-K
|
|
000-30361
|
|
10.6
|
|
|
2/16/2007
|
|
|
|
10.28
|
|
Amended and Restated Lease Agreement, dated March 27, 2012, between ARE-SD Region No. 32, LLC and Illumina
|
|
10-Q
|
|
000-30361
|
|
10.1
|
|
|
5/3/2012
|
|
|
|
10.29
|
|
Deferred Compensation Plan, effective December 1, 2007
|
|
14D-9
|
|
005-60457
|
|
99(e)(6)
|
|
|
2/7/2012
|
|
|
|
21.1
|
|
Subsidiaries of Illumina
|
|
|
|
|
|
|
|
|
|
|
X
|
|
INDEX TO EXHIBITS — (Continued)
|
|||||||||||||
|
23.1
|
|
Consent of Independent Registered Public Accounting Firm
|
|
|
|
|
|
|
|
|
|
|
X
|
|
24.1
|
|
Power of Attorney (included on the signature page)
|
|
|
|
|
|
|
|
|
|
|
X
|
|
31.1
|
|
Certification of Jay T. Flatley pursuant to Section 302 of the Sarbanes-Oxley Act of 2002
|
|
|
|
|
|
|
|
|
|
|
X
|
|
31.2
|
|
Certification of Marc A. Stapley pursuant to Section 302 of the Sarbanes-Oxley Act of 2002
|
|
|
|
|
|
|
|
|
|
|
X
|
|
32.1
|
|
Certification of Jay T. Flatley pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002
|
|
|
|
|
|
|
|
|
|
|
X
|
|
32.2
|
|
Certification of Marc A. Stapley pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002
|
|
|
|
|
|
|
|
|
|
|
X
|
|
101.INS
|
|
XBRL Instance Document
|
|
|
|
|
|
|
|
|
|
X
|
|
|
101.SCH
|
|
XBRL Taxonomy Extension Schema
|
|
|
|
|
|
|
|
|
|
X
|
|
|
101.CAL
|
|
XBRL Taxonomy Extension Calculation Linkbase
|
|
|
|
|
|
|
|
|
|
X
|
|
|
101.LAB
|
|
XBRL Taxonomy Extension Label Linkbase
|
|
|
|
|
|
|
|
|
|
X
|
|
|
101.PRE
|
|
XBRL Taxonomy Extension Presentation Linkbase
|
|
|
|
|
|
|
|
|
|
X
|
|
|
101.DEF
|
|
XBRL Taxonomy Extension Definition Linkbase
|
|
|
|
|
|
|
|
|
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Management contract or corporate plan or arrangement
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ILLUMINA
, I
NC.
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By
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/s/ J
AY
T. F
LATLEY
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Jay T. Flatley
Chief Executive Officer
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/s/ J
AY
T. F
LATLEY
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Chief Executive Officer and Director (Principal Executive Officer)
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February 18, 2014
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Jay T. Flatley
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/s/ M
ARC
A. S
TAPLEY
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Senior Vice President and Chief Financial Officer (Principal Financial Officer)
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February 18, 2014
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Marc A. Stapley
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/s/ M
ICHEL
B
OUCHARD
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Vice President and Chief Accounting Officer
(Principal Accounting Officer)
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February 18, 2014
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Michel Bouchard
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/s/ W
ILLIAM
H. R
ASTETTER
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Chairman of the Board of Directors
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February 18, 2014
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William H. Rastetter
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/s/ F
RANCIS
A. D
ESOUZA
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President and Director
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February 18, 2014
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Francis A. deSouza
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/s/ A. B
LAINE
B
OWMAN
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Director
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February 18, 2014
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A. Blaine Bowman
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/s/ D
ANIEL
M. B
RADBURY
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Director
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February 18, 2014
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Daniel M. Bradbury
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/s/ K
ARIN
E
ASTHAM
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Director
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February 18, 2014
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Karin Eastham
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/s/ R
OBERT
S. E
PSTEIN
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Director
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February 18, 2014
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Robert S. Epstein
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/s/ G
ERALD
M
ÖLLER
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Director
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February 18, 2014
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Gerald Möller
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/s/ D
AVID
R. W
ALT
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Director
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February 18, 2014
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David R. Walt
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/s/ R
OY
W
HITFIELD
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Director
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February 18, 2014
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Roy Whitfield
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No information found
* THE VALUE IS THE MARKET VALUE AS OF THE LAST DAY OF THE QUARTER FOR WHICH THE 13F WAS FILED.
| FUND | NUMBER OF SHARES | VALUE ($) | PUT OR CALL |
|---|
| DIRECTORS | AGE | BIO | OTHER DIRECTOR MEMBERSHIPS |
|---|
No information found
No Customers Found
No Suppliers Found
Price
Yield
| Owner | Position | Direct Shares | Indirect Shares |
|---|